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Should we submit transposon annotations to GO?
Should we submit dubious proteins to GO?
This question arose because of discrepancies making species comparisons.
It would be especially usefu…
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Hello
For the purpose of our studies, we are benchmarking some TE tools including RepeatMasker. We compare the output of RepeatMasker to the the Published TAIR Transposable Elements of Arabidopsis …
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Hi Fmalmeida,
I am getting the following error as I try to resume my pipeline analysis.
`Pulling fmalmeida/bacannot ...
Remote origin did not advertise Ref for branch refs/heads/116-integron_finder…
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This task arises out of https://github.com/legumeinfo/datastore-issues/issues/178 which seems to have generated enough discussion to warrant *specifying* the Name attribute for genes in our annotation…
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Hi beboli,
It is still me. After I successfully ran the irescue and got the three files (matrix.mtx.gz,features.tsv.gz and barcodes.tsv.gz) of each time point. I ran the command to add the TE assay i…
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Hi,
I'm wondering if there is an easy way to use multi-threading to run TEtranscript. I haven't found any option for that. The counting process is very slow for large RNA-seq files and this would spe…
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Dear Mourdas, first of all thank you for developing such super useful tool!
I was wondering if there is anyway to speed up TrEMOLO's processing time. Even providing 32 cores, I've realized that TrE…
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> parse
@mhemberg
Hai did you get restults by running these comments
"singularity exec docker://dfam/tetools:latest BuildDatabase -name sequence_index -engine ncbi sequence.fa…
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Hi Oiver,
Thank you to develop the powerful tool,I have a question,I currently have bam files that have been mapped using STAR for my research. I need to extract reads for a specific type of Transpos…
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Hello,
I run below command for joint calling which binds several bin file
`cat ../AD_WGS_batch1-7_STRling.txt | xargs -L 2000 strling merge -f ../../resources/chm13v2.0.fa --output-prefix ~/WGS/…