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Hi!
First of all, thank you for putting together such a nice pipeline! It's very convenient to have all of these tools in one place.
I installed BEAV using conda as per instruction on the readme…
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From Rosemarie.Sadsad [...] health.nsw.gov.au on CPAN.
Hi,
I am running Bio-Roary v3.7.0 as part of the Nullarbor pipeline, however the accessory_binary_genes.fa produced is empty.
0 Dec 8 2…
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Hi!
I wanted to plot Megalodon output. In another issue (#2), you suggested using the `per_read_text modified_bases` output file as an input for NanoMethViz. But when I try to make the tabix fil…
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Hi
From #14 It seems that MotifSeq could demultiplex a bundle of fast5 to retrieve the fast5 for each strains. Is this right? Or there is some options in Squiggle Kit to do the same?
Thanks
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I have used the command "hgtector database -o db_dir --default" to download the database. After downloading the protein files successfully. when downloading the genome files. it is showing following e…
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Beginning with sequence-based searches of the literature via PaperBLAST and using the sequences acquired from PomBase, UniProtKB
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Currently we have `kmc` as our genome size estimator on TheiaProk suite of workflows. This has shown to be widely inconsistent on ONT data, particularly when very long read sequences are present in th…
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Hi my error code is as below:
Traceback (most recent call last):
File "/data/cephfs/punim1258/chloe/new_rnaseq2024/bakta/myenv/bin/bakta", line 10, in
sys.exit(main())
File "/data/cephf…
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