-
For the python input it would be great if a simple pandas table or numpy array could be used as input.
-
Hi I installed humann3 with the command: pip install humann --no-binary :all:
Things seem to have installed ok, and the humann_test command all goes through well. However, when I try to run the d…
-
Hi there,
I want to use FAPROTAX but when I run the command, i get the following error
```
Traceback (most recent call last):
File "./collapse_table.py", line 65, in
import biom
ModuleN…
-
This shouldn't be affecting results, just noting here so we can track it. Tagging for 1.9.1 in case it's an easy fix.
``` bash
$ beta_diversity.py -i otu_table.biom -m bray_curtis -o o
/Users/capora…
-
MacQIIME Todds-Mac-Pro:qiime_to_lefse-master $ python qiime_to_lefse.py -m map_soil_final3.txt -t soil_phyloseq_json_L6.txt -c Description -o converted_2lefse.txt --clean
Traceback (most recent call…
-
Hi,
I have created a feature table using Qiime2 and have exported this as a biom file. However, this biom file cannot be imported into phyloseq [Error in `colnames
-
Write some setup instructions detailed eough to get someone going on a new machine.
- [ ] Document software dependencies and version numbers (should probably have Make generate this every run)
- [ ] H…
-
simulate_ornstein_uhlenbeck.py should output a QIIME2 qza file with OrdinationResult and Metadata:
-- 1. Separate out distance matrix output capabilities out of the simulate_ornstein_uhlenbeck.py c…
-
I use conda install, but it reports error. Check the errors shows below
```
$ conda install -c bioconda strainphlan
Collecting package metadata (current_repodata.json): done
Solving environmen…
-
Hello, I am new to KrakenUniq and I’d like to ask you a question.
I have obtained the KrakenUniq reports, and I want to import them in phyloseq. Do you authors suggest a best practice? Working with K…