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LangilleLab
/
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
GNU General Public License v3.0
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Microbiome Helper VM on Mac M2
#64
fconstancias
opened
2 months ago
0
Deblur run error
#63
crisper78
opened
4 months ago
1
a issue about the concat_paired_end.pl
#62
zhangyongyongsyau
opened
6 months ago
1
Citation
#61
Drob84761
opened
1 year ago
1
How to determine Function with MMseqs2 or humann2 for now?
#60
wanglu2014
opened
1 year ago
3
Why "Use of uninitialized value in join or string" error?
#59
wanglu2014
closed
1 year ago
1
which tutorial have example data to download?
#58
wanglu2014
closed
1 year ago
1
mSystem paper datasets are unaccessible
#57
Zuopeng94
closed
1 year ago
1
Scripts for Metagenome SOP v3
#56
rachelmugge
closed
1 year ago
6
parallel Unknown option: link
#55
soilmicrobiome
closed
3 years ago
1
Updated fix_spf.py
#54
gavinmdouglas
closed
3 years ago
0
reformat_fasta_edit.py
#53
DavidFY-Hub
opened
3 years ago
1
reformat_fasta_edit.py
#52
DavidFY-Hub
closed
3 years ago
0
ModuleNotFoundError: No module named 'biom'?
#51
arsilan324
opened
4 years ago
1
Improving Faprotax returns
#50
GarthWatson
closed
3 years ago
2
ARGs annotation
#49
mhmism
closed
3 years ago
1
microbiomehelper and qiime 2020
#48
turbo4xl
closed
3 years ago
1
removed outdated scripts
#47
gavinmdouglas
closed
4 years ago
0
--omit_columns option in collapse_table.py
#46
danielm710
closed
4 years ago
1
Correct cases of intermediate unclassified and fix preceding unknown
#45
gavinmdouglas
closed
4 years ago
0
Normalizing data obtained from other software?
#44
Jigyasa3
closed
4 years ago
2
Unstable taxonomic classification
#43
gavinmdouglas
closed
4 years ago
2
STAMP file updates
#42
gavinmdouglas
closed
4 years ago
0
Fixed bug where cutadapt logfiles with counts greater than a million …
#41
gavinmdouglas
closed
4 years ago
0
Added the RF_Utilities.R script used in my random forest tutorial.
#40
nearinj
closed
4 years ago
7
scons: building terminated because of errors.
#39
yjiakang
closed
4 years ago
7
Added script to fix QIIME2-based taxonomy SPF files
#38
gavinmdouglas
closed
5 years ago
0
humann2_barplot
#37
lmanchon
closed
5 years ago
1
GRCh38_PhiX database
#36
lmanchon
closed
5 years ago
2
updated options in qiime2_fastq_lengths.py script
#35
gavinmdouglas
closed
5 years ago
0
PICRUSt with de novo variants related databases
#34
AbhishakeL
closed
5 years ago
3
Error with the VM
#33
cristianrohr
closed
5 years ago
8
mammlian blocking primers
#32
krmaas
closed
5 years ago
2
BIOM fix and addition of script to get num reads in QIIME2 FASTQ files
#31
gavinmdouglas
closed
5 years ago
0
Biom error for convert_dada2_out.R
#30
jvhagey
closed
5 years ago
3
Problems running metaphlan_to_stamp.pl
#29
little-hunter
closed
5 years ago
2
Added the ability to choose the abundance cutoff for remove_low_confidence_otus.py
#28
nearinj
closed
5 years ago
3
Problem running FAPROTAX collapse_table.py in Python 3.6
#27
brookeweigel
closed
6 years ago
3
Confusing taxonomy assigenments from dada2_chimera_taxa.R output files
#26
caijian89
closed
6 years ago
0
Error in dada2_filter.R
#25
caijian89
closed
6 years ago
8
Problem running assign_taxonomy.py
#24
micro-mario
closed
6 years ago
3
About paired-end fastq data
#23
cam315
closed
6 years ago
2
made input filename more obvious in error
#22
gavinmdouglas
closed
6 years ago
0
Question about Random Forest
#21
TarsLi
closed
6 years ago
1
changed bowtie2 default to be very-sensitive
#20
gavinmdouglas
closed
6 years ago
3
added OMEGA_A and BAND_SIZE options
#19
gavinmdouglas
closed
6 years ago
0
Added filter_feature_table.R
#18
gavinmdouglas
closed
6 years ago
1
Added random seed and allow taxa assignment skipping
#17
gavinmdouglas
closed
6 years ago
0
Updates to concat_paired_end.pl
#16
gavinmdouglas
closed
6 years ago
0
added Unclassified as type of missing taxa
#15
gavinmdouglas
closed
6 years ago
0
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