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Hi there,
Thanks again for the tool.
I have 1 FCS that was acquired by the Aurora and 1 FCS that was acquired by Fortessa with much less number of markers. I aim to use the Aurora dataset to an…
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Hello,
I ran wenganM using ~60X Illumina coverage and ~10X Nanopore coverage (I know higher depth than this is best but it is what I have), for an expected 2Gb mollusc genome. Wengan finished in
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Hello,
Just hoping to get some insight into these smudgeplots that I have generated based on Illumina HiSeq data. These are for two closely related tree species. I've also attached the genomescop…
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Dear @CUHIMSR ,
Thank you for sharing this important tool for batch effect correction. I had a question regarding the reference sample named "anchor", i downloaded the fcs files from the vaccinati…
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Hi
For which paper this package is developed?
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For three different assemblies, the output from YAHS is exactly the same as the input assembly. I used the Arima-HiC Mapping Pipeline to map my HiC reads to my assemblies. Assemblies are either HiFi-o…
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Hi,
I'm trying to used PEAS on my own ATACseq data. I have already extract all the feature and performed a model using chromHMM.
My issue is that, the chromHMM output is a .txt file and it's s…
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Better error handling would be nice to have.
```r
> loadImages("IMC_oSCC_Angela2024/", "tiff", single_channel = TRUE, on_disk = TRUE, h5FilesPath = getHDF5DumpDir())
Error in normalizeDoubleBrack…
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https://flowrepository.org has an API! https://flowrepository.org/images/pdf/FlowRepositoryAPI.pdf
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Hi. I have been trying to assemble the genome of a plant species that has a high rate of heterozygosity. The genome size is around 2.8g, and I have about 40X coverage of HiFi reads and HiC.
I tried…