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Please list out what detailed intructions you would like ie how to make a blast database.
sr320 updated
9 years ago
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see #1001 for inspiration.
Currently, we turn them into As (explicitly) or Gs (by default).
@drtamermansour suggests that we ignore reads containing Ns (see https://github.com/dib-lab/khmer/pull/100…
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Hi, I'm trying to make a tree including the WH190xx sequences. https://nextstrain.org/community/babarlelephant/cov/early/china
Some are published on nmdc.
The others were assembled very naively from…
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I have tried running scaffold a few times on a sample, and I keep getting an error. The details are below.
During scaffold, the following command failed with return code -11:
> > /opt/metAMOS/metAM…
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2017.3.24 上午
====================
基因组
2017.3.24
====================
1.什么样的物种适合全基因组测序？
能被高引用的，才可能高分文章。
天山雪莲，从稀有、中药角度，老外估计不喜欢。
如果有天山雪莲的体外培养系统，做成耐寒的模式生物，则有可能发高分。
end9:45
2.技术流、思路哪个重要…
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Hi,
I am currently using the default mass_alphabet.txt, with parameters : EnforceUnique: 1, CutoffScore: 0, AmbiguityThreshold : 0.9.
How can I adjust the setting to make sure, only peptides wi…
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Hi @ksahlin. Thanks a ton for all of your tools with noisy reads. I'm looking for a solution for de novo clustering of ONT amplicon reads from environmental sequencing, ie fungal rRNA amplicons. The…
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The setup files `rhimgCAMI2_setup.tar.gz` and the genomes `rhimgCAMI2_genomes.tar.gz` used for the _A. thaliana_ rhizosphere mock data have been downloaded.
- `wget -P /path/ https://frl.publisso.d…
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Hello! I'm trying to install MetAMOS on my system, but having a bit of trouble. I've run the following commands, which completed without incident:
`python INSTALL.py core`
`python INSTALL.py optio…
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Hi Paolo,
Thank you for developing the shasta tool. I tried to use it to de-novo assemble a mouse genome from ONT sequencing data, and requested the exact AWS instance as recommended, which in theo…