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I downloaded all non-_K. pneumoniae Klebsiella_ data from v0.1.
I used the equivalent of the v0.2 species_calls.tsv.gz file to identify all _Klebsiella._ I then stripped out the species I didn't wa…
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https://ncbiinsights.ncbi.nlm.nih.gov/2018/12/03/adapting-flatfile-parsers-genbank-new-accession-formats/
"the LOCUS line, includes the “Locus Name” (usually identical to the accession number), whi…
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**Description of the task:**
Related to the conversation [on slack](https://embl-ebi-ait.slack.com/archives/CGKP7EZ54/p1621004881096700)
*tl;dr*: For certain accessions, trying to retrieve the fil…
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https://bactopia.github.io/tutorial/
I'm working through the tutorial.
```
# https://bactopia.github.io/tutorial/#build-datasets
bactopia datasets --ariba "vfdb_core,card" --species "Staphyloc…
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I noticed that new WNV sequences have `/isolation_source="urine"` but we don't pick this up in ingest.
https://pathoplexus.org/seq/PP_000RXVV.1
https://www.ncbi.nlm.nih.gov/nuccore/PQ381116.1
…
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### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above.
Hello,
I have to submit some genomes to ENA (European Nucleot…
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Hello guy, i wan to asking about my wiring method,
How about wiring method from microstep driver to makerbase dlc 2.1, what happen if i dont connect with ENA + AND ENA- from microstep to makerbase …
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### Expected Behavior
The "define" option in the context menu on a custom command block should bring the procedure definition into view.
In Scratch 2.0 it just brings it into view--doesn't cente…
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https://github.com/EBI-Metagenomics/genomes-pipeline/blob/853487f6dda1420fd8b6b41dd4aff5c8540c7e37/bin/fetch_ena.py#L66
The method above returns nothing. I believe it's because `metagenome_source` …
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I guess this could be done using `-p` in both `prefetch` and `fasterq-dump` and then hooking the stderr for those processes straight into `sys.stderr`. And then for ENA downloads, we could just add so…