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Use this thread to discuss potential figures. I think we need about one figure per section depicting the key concept from that section.
@Arokiarex is drafting a figure for the quantitative strateg…
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Hello!
Thanks for the amazing workshop, it was very useful.
I was following the https://hectorrdb.github.io/bioc2021trajectories/articles/TGFB.html for my own single cell analysis, and ran fgsea…
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A Wilcoxon rank-sum test is near equivilent to the GSEA method for set activity enrichment (see the fantastic paper (Gene set enrichment analysis made simple)https://www.ncbi.nlm.nih.gov/pubmed/200483…
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RESTful interface to do some or all of the following:
- Gene Info
- Term Info
- Enrichment Results (Both historical and most current)
- Stability Results
- Analysis
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Hi,
I performed the enrichment analysis using my background set, and repeated it restricting the background set to only include genes with at least one annotation term (based on annotation file tha…
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Hello,
Is this the correct interpretation of the results?
Column output for gsa-mixer include 'enrich' and 'enrich_std'.
Was expecting 'enrich_se' and/or 'enrich_pval'.
Can we do:
enrich_se…
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Hello!
I am doing the analysis of Go terms for Arabidopsis.
I have my data. I added genes Up and Dowm regulates separately.
For the Go enrichment analysis I use the Araport11 background,
And the f…
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What is the output for the analysis? Are the output values the standard enrichment scores from GSEA?
Thanks!
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**Describe the bug**
Molecular Function (MF) Enrichment (by using GO_Molecular_Function_2021, GO_Molecular_Function_2020 or GO_Molecular_Function_2019) for both enrichr R package and API doesn't retu…
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Thanks for all your work on this package!
I have a question regarding the p-values that are reported after using `rGREAT::getEnrichmentTable` . When running several datasets through the local analy…