-
Hi,
I'm running minigraph-cactus v2.8.1 for a small region of a genome with the following command:
```
singularity exec --contain --bind $(pwd):/data $SCRIPTS cactus-pangenome \
/data/jobstore $fa…
-
Hello, I am using the software in my non-model species data.
I want to ask how to obtain two files, training_mRNA.fasta and training_lncRNA.fasta, in this step. Is it a file that directly applies ex…
-
It appears that KMC will complain if you try to feed it a multi-fasta file instead of a fasta file. Eg.
multi-fasta:
```
>seq1
CGATCATGCATG
ACGTACTGCTGA
>seq2
AGCTCAGTCAGT
ACGCGTACGATG
```
f…
-
Hi,
When using the tool I've noticed that the coordinates for the bedfiles are off by one, when running;
```
olivar tiling --min-amp-len 1100 --max-amp-len 1300 -t 6 example_measles/olivar-ref.ol…
-
## Summary
1. Around 2013, there were requirements for processing data related to sequential data (e.g., binary data, sequences, etc.). We were investigating data on hepatitis E that was readily avai…
-
I am trying to run ```g2gtools extract``` with a g2gtools DB created from a GTF and a FASTA. It is running successfully but after 14 minutes it stops:
`2024-08-05T19:38:02.180415541Z GTTCCAATACTGTG…
-
Hi adebali :
These days I tried to run XRseq's pipeline (XR-seq-basics.sh) line by line.
When run line 46 -- echo "Get the dinucleotide content of the reads" and use fa2kmerAbundanceTable.py,
An …
-
I am running the latest version of Grandeur and erroneously getting an error (maxcpus isn't a supported param), even though I am not using that param. Here is my command-line and the error message: …
DrB-S updated
23 hours ago
-
I am attempting to convert my fasta files to fastq using the command:
seq -F contig.2.fasta > contig.2.fq
but I keep getting:
seq: invalid option -- F
-
I tried istalling it with conda and stand alone but still it didnot work .
TRASH_run.sh: 3: Bad substitution
/vol/pac/Software/TRASH
TRASH will be run with /vol/pac/New/old_TRASH_results/TRASH/…