-
Hi,
I am running version 4.1 in command line and I am getting all the output, except for top_genes. Do you know if there is something I can do to obtain it??
[cnmf.txt](https://github.com/dylkot/…
-
Hi, I was wondering if it was appropriate to compare enrichment values for a given ChIP data set across different lists of genes (i.e. comparing enrichr results between two different lists of enriched…
-
I would like to register genes. This is a request from EBRAINS. Question @tgbugs : should we put them in a separate terminology (I would suggest this) and can we extract the terms automatically from a…
lzehl updated
6 months ago
-
Hi,
I'm analyzing single-cell spatial transcriptomic, more specifically CosMx data base. In this database, I don't have the whole genome but only 960 genes. I would have liked to use copykat but th…
-
when I run code in
“”“
interpolated_gp_adata = st.tdr.gp_interpolation(source_adata=adata.copy(),
spatial_key="3d_align_spatial",
…
-
The iLINCS portal can be used to search for documented perturbations connected to a certain gene.
The idea is to integrate the iLINCS API at the end of our benchmarking pipeline for biological vali…
-
Compare 2 bed files of same panel but different version.
Compare 4th column for casual gene name and output the differences in genes.
Compare the 5th columns for transcript IDs and output the differ…
-
### Description of the bug
The volcano plots in `results/report/study.html#Differential_analysis` differ to the ones in `results/plots/differential/*/png/volcano.png`, screenshots below.
I strongly …
-
We have a need to modify the rank model category allele frequency for certain genes that have patogenic variants associated to them even though they are quite frequent in the population. Just like we …
-
Dear @cjops @mgandal @cyap7 @danielduyvo @leamhernandez:
Thanks for your helpful data!
It seems like the gene information of each line in the Galaxy file sQTL.mixed.40hcp.group.perm.genes.txt.gz…