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Clinical-Genomics
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genmod
Annotate models of genetic inheritance patterns in variant files (vcf files)
http://Clinical-Genomics.github.io/genmod/
MIT License
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Fix sorting of variants
#152
fellen31
opened
1 week ago
0
Update documentation with warning about multiple families when scoring compounds
#151
fellen31
closed
5 days ago
0
Up to date GitHub pages documentation
#150
fellen31
opened
1 week ago
0
genmod annotate - MT vs (chr)M
#149
fellen31
opened
2 weeks ago
0
Compounds only scores first family in VCF
#148
fellen31
opened
2 weeks ago
0
genmod score reorders variants - order not compatible with bgzip & tabix
#147
fellen31
opened
3 weeks ago
0
Is `--whole_gene` deprecated?
#146
fellen31
closed
3 weeks ago
2
How to interpret two or more inheritance mode given for a variant?
#145
rfarhad
opened
4 weeks ago
0
Fix #127 - update examples
#144
dnil
closed
3 weeks ago
1
Use poetry
#143
dnil
opened
1 month ago
0
Release restriction on Python 3.8 (collections import)
#142
dnil
closed
3 weeks ago
1
Failing update pypi action - add as trusted repo on pypi
#141
dnil
closed
1 month ago
4
Update readme
#140
dnil
closed
1 month ago
0
Bump version to 3.9
#139
dnil
closed
1 month ago
1
Add parameters for penalty and threshold
#138
Jakob37
closed
1 month ago
6
Genmod compounds control threshold and assigned score
#137
Jakob37
closed
1 month ago
0
Add GitHub Actions workflows for PyPI and CHANGELOG
#136
fellen31
closed
1 month ago
2
Ensure chrX and X are treated equally
#135
fellen31
closed
1 month ago
1
Fix unstable variants in models output
#134
fellen31
closed
2 months ago
0
Unstable compounds order in output from genmod models
#133
fellen31
closed
2 months ago
0
Model discrepancy when chrX has chr prefix (GRCh38)
#132
fellen31
closed
1 month ago
0
Malformed INFO lines
#131
fellen31
closed
2 months ago
1
Scoring an empty VCF
#130
fellen31
opened
4 months ago
0
Create VCF_DRSahajal
#129
DrParulGupta
closed
1 month ago
2
Silently missing values when using integer format in rank model and encountering a float value
#128
Jakob37
opened
8 months ago
2
"Error: No such option: -f" message when running example
#127
hrydbeck
closed
3 weeks ago
1
Phased models bugged?
#126
dnil
opened
10 months ago
0
Unfreeze python version, fix collections import
#125
dnil
closed
1 month ago
2
Makefile target for pypi dist upload
#124
torbjorgen
closed
3 weeks ago
1
setup.py: Set version 3.8.2
#123
torbjorgen
closed
11 months ago
0
Export Rankscore as Float Type
#122
torbjorgen
closed
11 months ago
1
Mixed int-float in RankScore
#121
torbjorgen
closed
11 months ago
0
setup.py: Lockdown genmod, limit compatibility to python v3.8
#120
torbjorgen
closed
12 months ago
0
python3.10: import error
#119
jemten
closed
12 months ago
1
setup.py: Set version 3.8.1
#118
torbjorgen
closed
1 year ago
0
setup py uplift requirements
#117
torbjorgen
closed
1 year ago
2
TypeError: annotate() got an unexpected keyword argument 'regions'
#116
manburst
closed
12 months ago
2
container broken for version 3.8
#115
jemten
closed
1 year ago
2
CHANGELOG, setup.py changes for v3.8.0
#114
torbjorgen
closed
1 year ago
1
Tag, build new release
#113
torbjorgen
closed
1 year ago
0
Link to documentation broken
#112
Jakob37
closed
1 month ago
1
set abstract_sockets_supported to False
#111
ramprasadn
closed
1 year ago
1
Compound scoring: Cap rankscore values to (min, ) range
#110
torbjorgen
closed
1 year ago
1
requirements: Set fixed version for deps
#109
torbjorgen
closed
1 year ago
1
Rankscore normalization
#108
torbjorgen
closed
1 year ago
11
Change or document AR_compound low scoring compound penalty
#107
dnil
opened
1 year ago
4
Allow "Source" and "Version" in INFO header
#106
maehler
closed
1 month ago
1
Error occurs if one or more variants in vep annotated VCF lacks VEP annotation when running with --vep
#105
bartcharbon
closed
1 month ago
2
Use poetry as build tool
#104
moonso
closed
1 month ago
3
Update docs on cli options
#103
moonso
closed
3 years ago
0
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