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Hi,
I do not have an exact issue. I have a query. What would be minimum sample size (How many controls, and how many cases???)one needs to predict the gene expression by PrediXcan?
Thanks in adv…
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It'd be easier to use iLash with other tooling if it could directly accept VCF input. At a glance, it looks like it might be possible to do this with only a new filereader implementation.
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From our colleagues at RCIGM, we have several example use cases related to genetic diseases. The goal is to take info about the variants and the phenotypes, and to propose candidate therapies. For t…
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In order to improve the informativeness of the TaxI3 output, one important additional features would be the support for phylogenetic trees in order to identify among the different species the direct s…
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Hi,
Thanks for this wonderful tool!
I am running a genetic correlation between brain volume (**C256_55**) and AD. I obtained very low h2 estimates for this brain volume (I ran GWAS with) and al…
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A very common pattern in genetic analysis is to assume that there is exactly two alleles at each variant site. Datasets are then forced to be biallelic by conversion. I guess there's a few ways to do …
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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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Clinvar is a public resource for information on human genetic variants. The FTP site is here: ftp://ftp.ncbi.nlm.nih.gov/pub/clinvar/, example variant record is here: https://www.ncbi.nlm.nih.gov/cli…
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Data sources use a variety of modeling elements to describe the collection of genetic elements that together produce a particular phenotype or contribute to disease progression.
We'd like one abstr…