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Hi, I am using the falcon assembler for assembling fungal genome and its genome size is around 120 Mb and it just produced the 184K of the p-contigs. Below is my config file
```ini
[General]
use_tm…
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When using MEGAHIT as assembler and using a relative path with `--tmpdir`, Shovill will fail at the assembly step. Here is the snippet from **shovill.log**:
```
[shovill] Assembling reads with 'me…
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Hi there,
I am using GenomeScope2 to check the heterozygosity rate of a plant genome (2n=28) with HiFi reads.
The initial assembly with Hifiasm was used for running a mummerplot with A. thalian…
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Hello,
I would like to assemble the plant mitochondrial genomes using Novoplasty. I read your recently published article, mentioned that RuBP used as a seed sequence for cp genome. But I would like t…
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I just tried to assembly the tetraploid with MaSuRca 3.2.7, but the file "PLOIDY.txt" shows "1", how can I fix that?
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Oberved
For example, in file
/rap/nne-790-ab/projects/FR-MicrobiomeSinges/20130215_nofail/RayMeta_Sample_JE1/BiologicalAbundances/_GeneOntology/biological_process.Depth=1.tsv
# Identifier Name …
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It took 3hours to generate 10GB NGS data (19GB total) on my laptop (4 cores)
- How many samples do we require to make it statistically correct?
- We are interested in host-contamination impa…
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Dear Martin,
Thanks for developing this wonderful software for TE expression quantification. I have a question regarding the de novo transcriptome. For non-model organism, we could perform a de nov…
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### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above.
rRNA and tRNA are thought to be difficult to be assembled from…