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We need to create an online documentation/ tutorial about how to use gwas-sumstat-tools, so that both internal and external users can read and use gwas-sumstat-tools using CLI or UI. When our formatte…
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A useful visualisation is the leaf trace idea used in ARGWeaver. Examples:
https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1004342.s002&type=supplementary
https://jou…
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Can an option be added to the main function to consider A1 as the effect allele instead? I have attempted to this manually, but it is inelegant without manipulating scripts contained within the MungeS…
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## 1. Bug description
`finemap_loci()` errors out with `conditioned_snps must have a length equal to 1 or the number of loci`
## 2. Reproducible example
### Code
```R
columnnames
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As a developer, I want to gather more accurate error information that does not display directly on the live page to assist users with debugging. A bug report template can help guide unfamiliar users t…
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- [ ] gwas-sumstats-harmoniser
- [x] Summary statistics with HDF5
- [x] Summary Statistics File Validator
- [x] gwas-sumstats-tools
- [x] sum-stats-formatter
- [x] eQTL-SumStats
- [x] gwas-template-s…
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Raising this issue to discuss API for selecting data from a given genome region, which could be either a whole contig or a contiguous region within a contig.
Breaking this out from [discussion thre…
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# 时间表
# 演讲者
![people](https://user-images.githubuserconten…
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brew upgrade
Error: Calling Formula.sha1 is disabled!
Use Formula.sha256 instead.
/home/rcmm/.linuxbrew/Library/Taps/chapmanb/homebrew-cbl/bcbio-rnaseq.rb:7:in ' Please report this to the chapmanb/…
yzhzu updated
7 years ago
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## 1. Bug description
Seems to be an issue downloading the reference files for MAGMA - specifically here my issue is with g1000_eur.bed. It fails on the example code from the vignette. Worth noting…