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### TASK
Currently, the build downloads are via the `builds/data_to_download.txt`, which is a list of URLs. While this will work for 90% of the existing data used, there are a few data provides tha…
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I wanted to use copykat to visualize the copy number variation of epithelial cell samples from this paper ([R code and downstream analysis objects for the scRNA-seq atlas of normal and tumorigenic hum…
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Hi! Hope this finds you well!
Is the LoomR tutorial not up-to-date anymore? Had a bug right in the tutorial: https://satijalab.org/loomR/loomR_tutorial.html
```
> library(loomR)
Loading requir…
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IT would be interesting to auto-generate a plot for the readme that summarizes the source ontologies that we are building on.
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Each feature name should be informative but as brief as possible especially considering the display in the explorer.
EDT: Feature names need to be reworked for the next release of siibra-explorer
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Rough idea, might be not precise:
- Once there was no life. There was just inanimate matter, molecules flying everywhere.
- Organic matter formed into nucleic acids
- The first organic compounds …
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Identify at least 2, ideally 3 alternative methods that can use prior information (known targets of transcription factors) to predict TF activities on single-cell transcriptomic profiles.
These met…
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**Hello, I currently want to reproduce the results in SEVtras using data from 15 normal tissues. When I was running the SEVtras.ESAI_calculator function, the following error occurred. I tried for a lo…
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Hey,
congratulations on your paper's acceptance!
You mention in the Discussion that it might make sense when using specialized data sets to select matched control genes based on a broad cell at…
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As per [suggestion](https://github.com/malariagen/fits/issues/56) I have written and run code to pull data only from MLWH and Subtrack, and not from iRODs/baton. See [this code branch](https://github.…