-
Hi,
thanks for putting together a great resource for novices to genomics data analysis!
I would suggest changing the wording in the subsection "Align reads to reference genome". Currently it rea…
-
Dear bcbio developers,
For some of the species that we work on we are now starting to receive significant numbers of long read sequenced samples.
The samples are sequenced using nanopore, PacBio …
-
Seqspec (https://github.com/IGVF/seqspec) is a machine-readable specification for libraries, a file format based on yaml, that enables sequence read annotation. The scope is broader than ours, includi…
-
Hi, Kai
Thank you for your tool. I am trying to apply it in my work.
I have microarray sequencing data of about 3000 individuals with ASA (**Asian** Screening Array) chips from Illumina. I …
-
Background
------------
I am currently using the pre-assembly processing step of the [ATLAS pipeline](https://github.com/metagenome-atlas/atlas) to generate enhanced input sequencing reads for FGS++…
-
API documentation: https://docs.ckan.org/en/latest/api/
Full package list from API: https://data.bioplatforms.com/api/3/action/package_list
Tag list: https://data.bioplatforms.com/api/3/action/tag_l…
-
I suggest using the poreCov pipeline as the backend for SARS-CoV-2 wastewater lineage deconvolution from nanopore long reads. You already added `freyja` ( #274 #270), which is great as the current com…
-
https://blog.software.illumina.com/2020/07/30/announcing-the-release-of-bcl-convert-software/
-
Hi @clintval,
do you have any plans of supporting the new SampleSheet v2 format?
Seems Illumina has released new tools and along a new version of the Samplesheet.
(https://blog.software.illumin…
-
Whole-genome sequencing of S. paradoxus mutation accumulation lines
DNA extracted using Zymo YeaSTAR Genomic DNA kit
Libraries prepped using homemade protocol (no kit, can find out more info if ne…