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### What is your question?
I am impressed with how cugraph's Louvain algorithm approaches modularity similarly to the serial algorithm. Could you please clarify if the Louvain algorithm in cugraph co…
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Hello,
I just tried the tutorial and met the below issue. Any suggestions? Thanks! K
>con integrated close(con = con)
>DimPlot(object = integrated, group.by = c("orig.ident", "ident"))
>cds sess…
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Hi there,
Thank you so much for developing such a wonderful tool for all of us! I was wondering if I might get your opinion on my curve/lineage data to see if I need to tweak some of the initial pa…
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orry to disturb, but it seems that the ingest method in scanpy meets some problems caused by pynndescent and numba. Here are the details:
KeyError Traceback (most recent call last)
/usr/local/lib/py…
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https://doi.org/10.1101/390153
> A fundamental problem in biomedical research is the low number of observations available, mostly due to a lack of available biosamples, prohibitive costs, or ethica…
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Thanks for your excellent software, thus making it possible for us to derive CNVs based on scATAC-seq data. After reading your code and introduction, I still have the following questions:
1 If I have…
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**Describe the bug**
When I fed my graph data into the cdlib.algorithms.leiden() method on a 400k node graph with 600k edges, the algorithm operated correctly and identified communities in the graph.…
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From Ronna:
"For each one of the single cell datasets that we have in the workbench - we need a saved analysis that is as close as possible to the published data, that includes the cell type assignme…
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Hi,
Thank you for developing such a wonderful tool. I am trying to run Giotto on my data sets but I ran into an issue when running doLeidenCluster. This is the error I get - any thoughts?
Thanks…
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### Discussed in https://github.com/aertslab/scenicplus/discussions/273
Originally posted by **rogercasalsfr** December 18, 2023
Hi everyone,
I am struggling to get the last step running sc…