-
We need to figure out how we want to implement metagenome assembly. The discussion needs to be divided into several parts:
1. What assembler(s) we want to use
2. How to make the Snakemake technica…
-
Hi, I would like to use panphlan but I cannot get over this error.
```
panphlan_map.py -p A.muciniphila_download/Akkermansia_muciniphila/Akkermansia_muciniphila_pangenome.tsv --indexes A.muciniphi…
-
| Name | Description | Size | Format | URL |
| --- | --- | --- | --- | --- |
| World Bank - Light Every Night | Light Every Night - World Bank Nightime Light Data – provides open access to all night…
-
##I want to extract the ribosomal protein sequence from metagenome-assembled genomes and reconstruct phylogenetic tree.
But I got an error:
"There are no HMM sources among your external genomes th…
-
Hi!
For context, I have 15 sets of marine samples, each sequenced and basecalled using ONT minION.
I intend to use METABOLIC-C.pl since I have community data. However, it seems that I have to use .…
-
Hi @fenderglass
I am using an assembly tool called lathe which has integrated FLYE version 2.4.2.
I want to assemble my ONT longread metagenome so what should be the approx genome size for the ass…
-
snakemake: error: unrecognized arguments: --threads=8 --mem=60 --large_mem=250 --large_threads=8 --assembly_threads=8 --assembly_memory=250 --tmpdir=/local_scratch/student198 --database_dir=/scratch/p…
-
Hello! I am using metagenome-atlas V2.3.0 on a cloud computing system. I recently ran into an issue where the pplacer package required more memory than was available in the cloud.
`Error in rule c…
-
This tool looks interesting. I was wondering if it can be adapted for use on bacterial metagenome-assembled-genomes (MAGs)? If so, what would be the ideal genome completeness required to predict OGT f…
-
@brwnj My professor and I don't think that a co-assembly over multiple files is a good Idea. He proposes me to do filter out known genomes to better assemble unknown.
On the other hand, co-assembly …