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A safe zone is a room or part of a room where your time resource does not deplete, or at least depletes much slower than normal.
Reference (LoZ Phantom Hourglass):
. It seems to b…
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Hello!
I recently started using pySCENIC for my mouse snRNAseq data and have a question regarding the input requirements for the cisTarget databases used to prune indirect targets. Should I include…
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Dear Adam,
I hope you are doing well. I just got to know about this tool to find telomers in assembled genomes. I Am trying to run this on one of my assembled genomes but the documentation in readm…
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Hello, I have a huge graph i want to calculate motifs from but for years i have been struggling to find a scalable library to calculate motifs. How does dotmotif scale ? Is there a Big O complexity an…
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Hello,
I'm currently running the Docker version of pyscenic (0.12.1) on HPC (Fedora). All was OK until I hit the pyscenic ctx command. My command is below:
`pyscenic ctx \
./expr_mat.ad…
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There is the [2018 VALMOD paper](https://helios2.mi.parisdescartes.fr/~themisp/publications/sigmod18-valmod.pdf) and, later the [2020 MAD paper](https://arxiv.org/pdf/2008.13447.pdf). VALMOD appears t…
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Hi Jacob,
Thanks for all your help so far - I was able to generate negatives for my ATAC-seq data using bpnet, and then ran the following successfully:
chrombpnet fit -p JSON
chrombpnet…