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Like to know https://drive.google.com/file/d/1d_ypVYTsXoMrTVJaEfVRGS5CfLkxyViK/view?usp=sharing is trained on which dataset?
Is it https://warwick.ac.uk/fac/cross_fac/tia/data/nuclick/?
Under this…
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Once we have a bit more time, some code clean-up is in order:
- [ ] grep TODOs, fix them and remove obsolete ones
- [x] Refactor `cell_level_analysis` by moving `InstanceFeatureExtraction` and `Ex…
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I tried to segment the FISH spots and save as polygons but it didn’t work very well:
Copy of email correspondence with @hackermd :
I get the impression that even at maximum zoom, I am not se…
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Anticipating the [Alfa Cohort Showcase](https://chanzuckerberg.github.io/napari-plugin-alfa-cohort/) that will take place on `Thursday, April 29th, 2021 from 8:00AM-1:00PM, Pacific Time (PT)`, it coul…
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The Expansion Microscopy Pipeline uses a filter to mask pixels that are ineligible for spot finding. This filter:
1. Matches the intensity distribution of each channel in each round
2. Averages t…
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## Creating ground truth for highly crowded images
Hi all, and a huge thanks for developers of StarDist! In an other project StarDist ensured the succession of the project, when it made segmentatio…
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potentially look at mode of bightness in mask to use -- tissue folds likely show 2 modes
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We used this transformation in a paper in preparation, it would be great to add this functionality to pycytominer to enable all future users access!
cc @jatinarora-upmc @shntnu
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Hi Sandhya,
I count not find your email contact anywhere so I aplogize to ask my doubt here. You can reply me in ankitbioinfo[@]gmail.com
I am Ankit postdoc in Dominic lab. I am looking on your b…