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I am evaluating the accuracy of Fragpipe.
Using Fragpipe 19.1 (MSFragger-3.7; IonQuant-1.8.10; philosopher_v4.8.0; Percolator 3.05), I run an LFQ analysis on publicly available data.
I used file…
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hi Michael
Please forgive me for bringing this up again... In my defense: You said nothing is preventing users from converting .d folders to mzml and analyze diaPASEF data :)
I have tried a few …
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which makes the appearance in Galaxy's tool menu really ugly:
```
```
The information is already in the `manual` which should be sufficient, or?
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Hi,
Biored ran efficiently, thank you for your help. I have one more favor to ask. How can I perform Named Entity Recognition (NER) and linking in the format required by BioRED for relation predict…
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Hi Matthew,
I am currently trying to run triqler on some existing dataset ([PXD000279](http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000279)) for a benchmarking experiment.
My…
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Hello,
I’m currently working with SearchGui and PeptideShaker on a CPTAC dataset and am encountering some issues. I successfully ran the PeptideShakerCLI, which produced a .psdb file of 66,072 byte…
SR-46 updated
2 hours ago
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# DeepScore: Community curated scoring, supercharged with AI
![EJ2PqRjXsAIQrb6](https://user-images.githubusercontent.com/16521288/195572456-62ab95bf-d0bc-4f70-b5e4-272cb509eff4.jpeg)
(Image taken f…
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I'm trying to run calibration on a published phospho-enriched TMT dataset, and all but two of the files fail to calibrate. Has anyone else tried to run calibration on such a dataset or know why it's f…
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Hi, could you please tell me that how the DeepRT+ do the calibration using a certain ratio of the test-group peptides after pretraining with the big data?
Thanks.
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ERROR: cvParam anchor protein should have a value, but it does not!
ERROR: cvParam protein-pair-level global FDR has a value, but it should not!
ERROR: cvParam residue-pair-level global FDR has a valu…