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Hi @ctb, I have been using Sourmash for a while in a metagenomic context - its honestly an amazing package that changed the way much of the field does taxonomic annotation. However, there is one featu…
ursky updated
8 months ago
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HI George,
I followed your advice and tried hybracter on my bacteriophage ONT data ... it rocks!! congrats for that other cool pipeline
two minor suggestions next
I got the same assembly as m…
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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8262757/
I'd like to get the plannotate auto annotation suite working with poly.
Here's a link to the code: https://github.com/mmcguffi/pLannotate/t…
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### Description of feature
Added new functionalities and parametrs e.g. ´--force` `--plasmid` and other improved CDS annotation sensitivity
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Hello,
I have been having an issue with a couple of genomes where the results do not contain all of the output files especially, the annot.aa and the .gbk files. I have looked at the log files and …
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Dear all,
The proposal has been made to obsolete
GO:0043631 RNA polyadenylation
GO:0006378 mRNA polyadenylation
GO:1900364 negative regulation of mRNA polyadenylation
GO:1900365 positive re…
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Curation by @MPiovesana
https://canto.phi-base.org/curs/b6da8569a501db3e
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More than just a genbank parser, we should have a refseq parser.
From https://ftp.ncbi.nlm.nih.gov/genomes/refseq/archaea/Halobacterium_salinarum/latest_assembly_versions/GCF_000006805.1_ASM680v1/…
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Dear Ivan
Im unable to get assembly and as the assembly fails all the other steps are fail.
Please help me withe error:
```
`rMAP is will now perform De-novo Genome Assembly using shovill...…