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directly add variants prior to search
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Hi,
I am running a closed search using a set of mgf files. I am interesting in adding a peptide N terminal pyro-glu modifcation to my analysis. But MSFragger freezes after starting the process. Th…
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The X! Tandem converter (tandem2pin) crashes on an input file (X! Tandem result) with the following line:
``
This is the error message:
```
XML parser error at /tmp/2017-04-21_110605_ebi5-188.…
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Hi,
I am running MSFragger on Linux using default open search parameters. The reverse decoy database were generated using DecoyDatabaseBuilder_dist_1.5.47. Decoy label "REV_" were added to the deco…
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It would be great if my last two OpenMS-related papers could be added to the list on the website (http://www.openms.de/publications/):
- https://www.ncbi.nlm.nih.gov/pubmed/27786492
- https://www.…
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Can someone (@PratikDJagtap) point me to the Galaxy-P proteogenomic workflow into which I should integrate my Omicron tools, e.g. CustomProDB and PSM2SAM? I checked the "Published workflows" section o…
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Hi Harald, Marc,
Sorry to disturb again...
I'm trying to export my proteogenomics project as mzIdentML (v1.1) (in order to convert to proBAM).
This throws an error at around 72% of completion:
…
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Hi Harald, Marc,
I'm rerunning some old experiments.
Shotgun experiment using a RIBO-seq derived protein search space concatenated with SwissProt.
Searches with SearchGUI went fine.
I think "PTM…
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I am adding the proteogenomics encoding to the spec doc. I am opening this issue to check that the validator @germa checks that this term is present in SIProtocol:
``
And then expects ALL the follo…