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Hello Florian,
in the description of the output table you say "intronic reads are not considered (as they would bias the NTR)". However, I split my bams in reads mapping on exons and reads mapping …
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Hello,
As far as I understand, the pipeline executes the steps of extracting UMIs and clustering the sequences based on those UMIs twice: once in the raw reads, and once again in the consensus rea…
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### Backend
CH (ClickHouse)
### Bug description
2024-09-20T10:21:35.670057896+08:00 20. Java_org_apache_gluten_vectorized_BatchIterator_nativeHasNext @ 0x0000000005e765d7
2024-09-20T10:21:…
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Is there community interest for allocation-free reads? This was a suggestion for future work from @benbjohnson.
After zooming into the existing code, it may be feasible.
It could be reached in 2…
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Can I use this software on an already assembled partial mitogenome. The genome was sequenced as metagenomic environmental sample using Oxford Nanopore long read technology. Any help is appreciated
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Hi,
I found No reads in Output of MMARGE.pl allele_specific_reads
samtools view
it was data from F1 mice
I run:
MMARGE.pl allele_specific_reads -files S1_shifted_from_CAST_EIJ.sam -ind …
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Hello,
and thank you for this amazing tool. I am currently examining different methods of hybrid de novo transcriptome assembly.
I constructed various assemblies from mouse data and compared their…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Describe the bug
`RegistryXmlRepository` takes a `RegistryKey` as a parameter in its constructor ([code …
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## Bug Report
### 1. Minimal reproduce step (Required)
### 2. What did you expect to see? (Required)
Per [definition](https://www.pingcap.com/article/exploring-read-committed-and-repe…