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Hello again, so could you help me with one issue with LTR_struct?
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Running LtrHarvest... : 00:39:33 (hh:mm:ss) Elapsed Time
Running Ltr_retriever...LTRPipeline: **No results a…
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Dear Professor Ou, @oushujun
I'm sorry to disturb you during your busy schedule, but now I have a question that I have to ask you.
**The issue I am most concerned about is the issue regarding th…
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Hello, here's my issue:
I ran tandem-genotypes on long reads (Oxford Nanopore) on a RepeatMasker locus and obtained this result:
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chr11 70487135 70487173 TGC SHANK2 coding 0,0,0,0,0,0,0,0,0,0,…
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Hi, When I run RepeatModeler, I end up with RepeatClassifier: ERROR from search engine (2).
There is no final families.fa, but the log file shows that it runs completely. Also when I run RepeatClassi…
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Hey!Have you solved your problem? I had the same problem.
_Originally posted by @wuyh0328 in https://github.com/oushujun/EDTA/issues/448#issuecomment-2011172734_
haven't …
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I run the RepeatModeler without parameter "-LTRStruct" . Since this parameter appeared at this version... So I want to know that how big different between use or don't use this parameter? And I also w…
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sr320 updated
11 months ago
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Dear sir/maam,
I am getting error (Error: Unknown argument: "blastdb_version") while building database with RepeatModeler
./BuildDatabase -name Sonasal_3x.fasta -engine ncbi /home/anurag/Downloads…
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Hi,
I was trying to convert the stk output file in a hmm, however, I got an interesting result with hmmbuild.
It seems like there are duplicated sequences within the same alignment (coordinates), th…
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Dear Professor,
Which version of perl should be required in Linux system? At the home page of RepeatMasker, It said that perl 5.8.0 or higher should be required? There are some differences between …