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Hello Cell2location devs,
Small question: does cell2location expect the expression matrix for scRNA reference data to be:
A. Normalized for library size and log-transformed (as is often done in …
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Hi,
I'm getting an error when I try to predict RNA sequences longer than 600 bases:
Here is the error when I input sequences of 700 bases:
Welcome using UFold prediction tool!!!
Traceback (mos…
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https://github.com/SergeyIlin322/miptsem1/blob/3d73f5cedf18b30e335dcdbb2711960e89949597/SergeyIlinDZ4.py#L2-L3
1/1
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Bug
```
library(Seurat)
library(SeuratData)
data("pbmc3k.final")
pbmc3k.final
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Hello,
I am attempting to simulate the melting of a 9bp DNA duplex; I would like to estimate its melting temperature under a variety of conditions. I have been basing my simulations on the RNA Dupl…
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Hello!
I'm trying to run the hadge pipeline (v0.2.0) and am running into issues with the hashing demultiplexing side using conda. Wondering is this part of the pipeline considered stable? Using Nextf…
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the envs/shared.yaml and envs/createIndices.yaml are created without issues.
but the whole process just fails in the next level
```bash
Creating environment (3/24) from envs/rna_seq.yaml with has…
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Hello,
I have implemented RNA-Bloom on a subset of the PacBio bulk transcriptomic data and achieved the expected results. However, I noticed that some steps in RNA-Bloom take a considerable amount …
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Hi,
I'm wondering if it's possible to use NanoMethViz to visualise RNA methylation data, e.g. using methylation probability output from m6Anet? Especially as ONT are now including m6A base-calling …
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I just found out one of my wildcard certs had not renewed and is now expired. Luckily, this i on a backup server and the main one will still be valid for a month. I am running (worked fine until I no…