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Hello,
Section 1.3 of the README reads:
> At this point, we get
> - a scRNA-seq count matrix from cellranger (1.1) with automated filtered cells based on cellranger cutoffs for detecting empty …
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It seems that would be a powerful tool for the scRNA-seq data.
One of main concern is that acquiring reliable variants set for scRNA seq is challenge due to the high false positive and the limited se…
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I am unable to install cellphonedb using the instructions on github and wanted to upload my data to your server for analysis. Could you please let me know when this will be available? Currently, I am…
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Hi!
Is it possible use SCNorm on a dataset without multiple conditions?
I receive an error that says I must `Must supply conditions.`
Thanks in advance for answering my query.
Best regard…
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With Azimuth annotations available, the cell type annotations should be made more visible.
Suggested layout:
![image (32)](https://user-images.githubusercontent.com/1216518/142284413-eb59d274-a7…
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Hi, I now want to use spatialscope as baseline, but it hardly works on the new dataset.
On the one hand the new dataset doesn't have cell type, I tried to use the clustering results as category label…
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https://doi.org/10.1101/199315
>Single cell RNA sequencing (scRNA-seq) is a powerful technique to analyze the transcriptomic heterogeneities in single cell level. It is an important step for studyi…
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Can you share any scripts that you have to convert an arbitrary scRNA-seq cell-by-gene matrix into the format your model inputs?
Thanks
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Hi!
I was following the tutorial for integrating scRNA-seq data and scATAC-seq data using the dataset provided. However, I get the following error when I run the step: atac = tfl.findNeighbors(adat…
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Hello,
Thanks for making this tool. I have a quick question about the parameters involving cells.
User can input the number of cells expected in the run, and/or also input the list of cell barcod…