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Read first sequence length and do the check
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For some datasets, oligo-analysis returns highly significant k-mers, but
- the assembled matrix is of poor complexity (basically, the matrix contains a succession of Gs)
- `position-analysis` retur…
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Hello,
I have a problem running the following command : `m2m recon -g rocks -o rocks_m2m -c 16`
Here is the error message :
```
######### Running metabolic network reconstruction with Pathway T…
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### TF cooperativity
0. asymmetry vs symmetry, independence/correlation, pair-wise cooperativity relationship
 and some of the expected STR…
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Hi all,
we have done basecalling with Dorado with the following command:
dorado basecaller rna004_130bps_sup@v3.0.1 --modified-bases m6A_DRACH > output bam.bam
Do I have to search for the DRA…
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Following up on your previous question @biouserPD
To run sneep you need:
- the genome of your favourite organism in fast format
- a list of species specific TF binding motifs (PWMs) in TRANSFA…
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Hello, and thanks for the nice R package.
I'm interested in using ShapeMotifEM, but am having trouble figuring out how to calculate performance metrics for the motifs it identifies. How would you rec…
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**Coach assistant:** @probeadd
**Sanity checks:**
* [x] GitHub profile photo + detailed profile description
**Organizations:**
1. CLiPS, University of Antwerp
2. Stony Brook Univers…