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Wasm producers such as LLVM often generate Wasm code with a so-called shadow stack in order to handle parameters and return values that did not fit the Wasm function parameter and result passing model…
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I am trying to use the beta functions
![image](https://github.com/smith-chem-wisc/Spritz/assets/21457/a4c3de3b-a926-4a0d-99c1-083b305ddcab)
but facing this error (log below), any ideas how to pr…
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I am running nanopolish variant calling on chr22 of a NA12878 dataset. I generated small regions using the *make range script* and launched multiple nanopolish instances using *parallel* command. How…
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Transferred from sars-cov-2-variants/lineage-proposals#955
HK.3.2> C100T> C22208T(S:L216F), G23222A(S:E554K), A26441G(E:N66S)
Query: C22208T, A26441G
S:L216F and S:E554K are convergent with BA.…
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We want to implement functions in the Variant class to calculate various metrics to evaluate genotype imputation performance (discussed #2193).
The simplest metric is the **_overall concordance_**,…
szhan updated
2 years ago
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I am comparing a lifted over gtf file from LiftOff with the reference gtf using liftofftools, but get this error:
`gffutils database build failed with UNIQUE constraint failed: features.id`
The co…
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The algorithm in [CSS Fonts, 5.3. Cluster Matching](https://drafts.csswg.org/css-fonts-3/#cluster-matching) is defined as follows:
> For sequences containing variation selectors, which indicate the…
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As the title says, the command `PanGenie-index` in newest master branch is :
```sh
program: PanGenie - genotyping based on kmer-counting and known haplotype sequences.
author: Jana Ebler
versi…
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On the new HiSeq 4000 the first base is often replaced with and 'N'. This can be seen in the first ~million reads. This then limits the diversity of the UMI sequences. If this is trimmed or ignored an…
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## 🚀 Feature
Log-linear version of cumsum and cumprod, as the current version has quadratic time-complexity.
## Motivation
The current cumsum and cumprod are too slow for long sequences. They n…