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Hi
I am using raw count data from single cell RNA-seq and bulk RNA-seq.
I am currently stuck at running the deconvolution function solveDampenedWLS().
I get the error :
```
Error in solve…
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Project Title: Single-cell RNA-seq analysis throughout a 125-day differentiation protocol that converted H1 human embryonic stem cells to a variety of ventrally-derived cell types.Project Short Name:…
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See parent Epic for further information.
https://github.com/chanzuckerberg/single-cell/issues/644
See current draft for spatial support in SOMA https://docs.google.com/document/d/1S48pD5XTzDcaLGl…
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I just want to start a monocle analysis on a time-course single-cell RNA-seq data set. Wondering at the current stage, monocle 2 or 3 is more recommended. Many thanks for any suggestions.
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Project UUID: 9c20a245-f2c0-43ae-82c9-2232ec6b594f
Project Title: Transcriptomic classification of human retinal cell types with single-nuclei RNA-seq.
Project Short Name: snRNA-seq_for_human_retina…
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Hello,
I was looking at the single cell RNA-seq data ( doi: https://doi.org/10.1101/2020.07.08.192997) but the rds file is not available anymore at this link https://drive.google.com/file/d/1NiMLfB0x…
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Good day,
I am eager to test this excellent tool on our data. I have seen in the tutorial and demo data that the vignette uses only one bulk RNA sample as well as an ST experiment.
Is it possib…
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Hi,
I have bulk RNA-seq from islets cell populations (alpha, beta, delta cells etc.), and am interested in analyzing the content of each sample.
For example, I would like to know for a sample lab…
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Hello,
I was wondering how you decide for the "ct.sub" parameter, i.e. "subset of cell types that are selected to construct basis matrix" ?
I get the "Not enough valid cell type!".
How does t…
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Hi,
I am trying to run CellChat on a single nuclei RNAseq dataset from the turquoise killifish. I basically followed the steps given in the [previous version of CellChat,](https://github.com/sqjin/…