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Thank you for creating this RNA analysis pipeline
In immune repertoire part, I used TRUST4 tool to analyze TCR and BCR infromation according to your direction.
But, I encountered below error messa…
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Hi there, I am using TRUST4 to get data from a series of .bam files. I am having a number of files fail after read extraction, with the following error:
> SYSTEM CALL: /path/to/TRUST4/annotator ..…
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Hi there, I've been trying to use combineTCR with TCR repertoires reconstructed using TRUST4 on SMARTseq samples (the output files don't have all the columns that are required by the combineTCR functi…
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Hi
thanks for sharing the data and letting the world use it for science!
Would it be possible to also release the h5ad version of the file readable via scanpy? many people
use scanpy and would…
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I am running into issues when trying to install tcrdist3 using a conda environment. Here are the steps to reproduce, along with the resulting error:
```
> conda create --name tcrdist3 python=3.8
…
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**Describe the problem**
T-cells are an integral part of the adaptive immune system, whose survival, proliferation, activation and function are all governed by the interaction of their T-cell recepto…
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Discussion on how to construct meta titles and descriptions:
https://docs.google.com/document/d/1R8ocUllm8EV3SPd5XBkY1rIC8sZgYVV1A93dsA7QujQ/edit#heading=h.kh7oxyc39a8c
DoD:
1. Add tissue descriptio…
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Dear scirpy developer,
Thank you to develop this amazing pacakage for analyzing the scTCR.
I have one question about the results. When I analyzed the data with multiple clusters with different c…
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Hello,
I am trying to cluster my CD4 T cells based on their aa TCR sequences. I tried either appling the ClusterTCR function directly on the seurat object or on the object resulting from the Combi…
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Is there a function in the repository for clustering TCR sequences with 1 amino acid difference? This can precedate Repertoire overlap analysis.