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VirSorter results folder "is" empty for the parse script when the CWL pipeline is executed with toil.
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We can feed the file directly to ratio_evalue_table.py
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Hello,
Thank you for making this Nextflow pipeline, it's really a great resource to have!
Something I noticed when doing some preliminary work with WtP so far is that there is no user-facing opt…
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Dataset: ENNGS "Viral_metagenomics" dataset
The ENNGS data is already cleaned of HuGo reads. `Jovian` assumes that there are at least some reads of the specified background organism. In this datase…
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hello,
I used MetaPhlAn 3.0 to assign my metagenomics reads to the database using the following commands:
source activate metaphlan3_env
metaphlan \
A1.fq1.gz,A1.fq2.gz \
--bowtie2o…
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After installing metaphlan 3.0, and activating its conda environment, I ran:
`
metaphlan --install
`
This produces the following error:
```
File /tigress/MOLBIO/local/pythonenv/metaphlan3/…
mcahn updated
3 years ago
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How many novel Cornoavirus species in nature remain to be discovered? This is a fundamental biological question that we are uniquely positioned to answer. Estimating the number of things that nobody h…