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`oe_match("Ireland")` defaults to "https://download.geofabrik.de/europe/iceland-latest.osm.pbf" (note the **iceland** part) as opposed to "https://download.geofabrik.de/europe/ireland-and-northern-ire…
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I know this error has been resolved in other posts, but those solutions did not work for me. This is the output that I am getting:
mkdir: cannot create directory '7321.1.67340.GGTAGC.fastq': File e…
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Current scheme: AGAT
- Ross's Perl script (gene.t1, gene.t2, etc.)
- mRNA or transcript (GFF3 requires mRNA)
- liftoffID is acceptable (Ross)
- For a gene with multiple different descriptions=di…
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Hi, just a question. AGAT seems to output GFF3, e.g. `agat_convert_sp_gxf2gxf.pl` produces files with the header
```
##gff-version 3
```
The wrapper plain GFF, e.g.
https://github.com/b…
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Hello,
I'm wondering if anyone can assist with some issues I'm having re: locus assignment.
Some of my forward primers include ambiguous nucleotides (K, W, R, etc.) and some of the expected STR…
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The spec points here: https://github.com/modENCODE-DCC/validator/blob/master/new_gff_validator.pl
This is 7 year old perl code
The SO wiki has:
http://www.sequenceontology.org/so_wiki/index.php…
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I'm seeing a much larger increase in rendering time from adding a blur filter to an image on v0.33.0 and later than earlier versions
Rendering this svg:
```svg
```
Testing with: `./r…
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# 生信爱好者周刊（第 146 期）：
这里记录每周值得分享的生信相关内容，周日发布。
本杂志开源（GitHub: [openbiox/weekly](https://github.com/openbiox/weekly)），欢迎提交 issue，投稿或推荐生信相关内容。
[「生信周刊讨论区」](https://github.com/openbiox/weekly/discuss…
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Hi Jacques,
Instead of providing the average for a lot of features, can you provide the median, 90% and 95% percentile values? I feel these metrics summarize the annotation data better than average…
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**Is your feature request related to a problem? Please describe.**
I have been trying to use **agat_sp_extract_sequences.pl** to extract all CDS over several transcripts of a single gene, but as far …