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Hi, thanks for the great work on this tool, I have already found it very useful! I have run into an error with the new bakta plot feature, after calling bakta on a genome using default settings, or ca…
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@andrewyatz @reece @jmarshall As the [previous Beacon discussion](https://github.com/ga4gh-beacon/specification/issues/251) did show, we need a place to "document standards & conventions used in GA4GH…
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Hi guys,
I was reading the notebook for analyzing the UKB data [here](https://github.com/mcveanlab/treeseq-inference/blob/master/human-data/UKB_plot.ipynb). I was wondering if the output data at va…
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Hello,
I would like to annotate a gapless rice assembly, so I run EDTA with this command:
`EDTA.pl --genome genome.fa --species Rice --cds CDS.fa --curatedlib ../RepBase22.03.fasta/oryrep.ref --se…
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Hello, hope you are all having a good day. I am running some analysis of some agalactiae isolates and for the most part this was successful in its execution however I have 5 isolates that did not succ…
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Hi and thanks so much for working on this. A patched, accelerated and potentially multi-threaded Prodigal alternative is very much needed and your effort very much appreciated!
We considered `Pyrod…
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Hello Felix,
I am working on a mouse data set of single-end, non-directional RRBS data - but have gotten a really low mapping efficiency of 25-28% for all samples. I trimmed the data with `trim_gal…
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**Submitting author:** @cagret (Clement AGRET)
**Repository:** https://gite.lirmm.fr/doccy/RedOak
**Branch with paper.md** (empty if default branch):
**Version:** v0.1.5
**Editor:** @lpantano
**Revie…
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## Description
Sub-lineage of:BA.2.3.2
Earliest sequence: 2022-08-20
Most recent sequence: 2022-08-23
Countries circulating: Vietnam
Genomes
hCoV-19/Japan/IC-13842/2022, EPI_ISL_14853710
hCoV…
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Hi,
I'd like to update an "old" Hi-C scaffolded Canu assembly by paying special attention to tandem repeats such as rDNA arrays and centromeres -- i.e. I'd like to target these as regions to improv…