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Dear developers,
I'm trying to identify a fusion break that seems to occur in introns with a very very low expression value. I have only 7 read pairs out of 15 million read pairs for the fusion gene.…
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Hello
I am using Clinker to visualize one of the fusions came from fusion catcher tool. I have made a csv file with the coordinates of the fusion named DUX4:IGH@ similar to the bcr_abl1.csv file men…
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VR needs to have a path for representing translocations.
Allele is currently defined as a contiguous sequence change at a single location. Translocations and junctions are unlikely to fit in that m…
reece updated
7 months ago
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Hi, Dr. Zhang,
Thanks for the tools to detect gene fusion events.
I’m wondering what the standard format of the gff3 file is? Maybe an example file is helpful to the users.
Best regards,
Li Se…
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This is for my own dataset not the dataset in test folder.
pizzly -k 31 --gtf ../Homo_sapiens.GRCh37.87.gtf.gz --cache index.cache.txt --align-score 2 --insert-size 400 --fasta ../Homo_sapiens.GRCh…
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@hsun3163 please fill it up.
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### Description of feature
Following up on https://github.com/nf-core/rnaseq/pull/1369#discussion_r1744079079.
@MatthiasZepper Please take over this issue.
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Can not detect the fusions with the test data,is anyone can help me? all the testdata is from the git and
http://opengene.org/dataset.html
Here is my shell command:
./genefuse -r Homo_sapiens_a…
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This is a feature request.
It would be great if STAR would support dynamic masking for an already built genome index.
This feature would be useful especially in calling fusions, where the genes …
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Hi there!
I would like to validate experimentally some fused genes. For doing that, I should keep the most expressed isoform for each gene. I would like to know how FusionInspector decides the iso…