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Hi Tiago,
Our build is currently failing: http://bioconductor.org/checkResults/devel/bioc-LATEST/coMethDMR/nebbiolo1-checksrc.html
The issue is that `tail()` is not imported from the `utils::` nam…
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The case where a `GenomcRatioSet` doesn't contain any CN values (i.e., `getCN(grSet)` returns `NULL`) results in a missing variable error from `cpgCollapse`. Solution is to initialize the `collapsed_c…
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Lines 875-877 of dataman_2019.Rmd generate a 404 not found error after authenticating with Google BigQuery and returning to R as directed by the browser:
```
tcgaCon %>% tbl("Somatic_Mutation") %>…
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I tried to download the full version of the metadata database by using the SRAdb, but unfortunately, I didn't succeed.
> timeStart sqlfile proc.time() - timeStart
user system elapsed
0.…
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From Tajuddin, Salman
I was going through your 450K data analysis with minif, located here http://kasperdanielhansen.github.io/genbioconductor/html/minfi.html and encountered an error when merging…
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Dear Dr. Mangiola,
Thank you for the very nice package. I am working with large scale single cell RNA seq data and wnat to use tidySingleCellExperiment.
I discovered that `aggregate_cells` takes v…
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I am getting the following error in `preprocessFunnorm`:
> Error in preprocessCore::normalize.quantiles.use.target(matrix(crtColumn.reduced), : Supplied target argument should be a numeric vector…
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I'm coming across a problem while trying to analyze WGBS data from CD4 and CD8 T cells (3 vs 3 samples). I used the following code:
```
bsseq_obj = BSseq(chr = chr, pos = position, M = M, Cov = C…
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Hello,
When I add a vector of numeric value to the age argument, the DNAmAge function fail with the error message next:
```
Error in methylclock::DNAmAge(myBvals, age = AgeAtV1) :
cell counts…
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Hi,
I am encountering the issue with the var.features which is not present in the meta.data. I tried to manually add the col var.features and still no luck.
`query.projected
apal6 updated
4 months ago