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Hello teacher, I have a question I would like to ask you, I hope you can answer it, I will be grateful! I first use HiC-Pro software and DnpII alkalase to process the HiC data, and then use EndHiC to …
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Hello,
I am looking at the contig graph produced using contig2fastg. I saw sequential contigs with no branching.
Maybe I am missing something but if there is no branching why are those contigs not …
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Hello
Sorry if I am asking silly questions. I am a beginner and a bit confused with the pipeline. Is there any tutorial showing how to run this workflow? I do not know where should we add our input…
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The protobuf format doesn't currently have a way to represent when edges are part of paths.
Case in point (from the test directory):
``` shell
➜ test git:(master) ✗ vg construct -r tiny/tiny.fa >t.…
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**1. What were you trying to do?**
I want to try to call structural variants of nanopore reads. Therefore I mapped the reads with GraphAligner:
```
GraphAligner -g hprc-v1.0-mc-grch38.gfa -f SU…
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**PLEASE DO NOT MAKE SUPPORT REQUESTS HERE**
Please the Biostars forum instead:
https://www.biostars.org/new/post/?tag_val=vg
Ok I will post on Biostars later.
Hello dear friends!
Tha…
yeeus updated
2 months ago
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I've returned to give MoMI-G another shot, this time with human data but I get an error trying to generate the `xg` file.
```
$ ~/MoMI-G$ sudo bash MoMI-G/scripts/vcf2xg.sh proband_trim_bwaMEM_s…
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Thank you very much for providing such a useful tool！
I successfully used it to assemble the genome of a diploid orchid. I want to get the gfa file of the diploid assembly, similar to the hifiasm_r…
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@taylorreiter would like some output that would be flexible enough to work with using igraph or other network viz packages in R. Something that is a bit more customizable/annote-atable than GFA would …
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I am running hifiasm, it seems to complete (see below). The bin files are created:
-rw-r----- 1 joanna.l.kelley its_p_sys_ur_kam-kelley 16865946225 May 26 17:04 Oamb.asm.ec.bin
-rw-r----- 1 joanna.…