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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/MalteThodberg/TeMPO
Confirm the following by edit…
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Dear developers,
Our group is working on a soil metatranscriptomic project with a quite large amount of samples. We plan to use the merged mode. Specifically for this kind of project, is there one …
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https://mp.weixin.qq.com/s/hYfXZ0iBCUrHIwVvWv-a1A
ixxmu updated
3 years ago
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As one can see for the following Item, Senior Theses Items imported from submissions for certificate programs are members of multiple collections, one being the departmental collection, the other bein…
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Please comment on the inclusion of the following terms in omics inclusion comparison:
**\*omic(s) matches**
| term | count |
|:--------------------|-------:|
| genomics …
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I'm currently attempting to run RCTD on the cerebellum data given in the Robust decomposition of cell type mixtures in spatial transcriptomics. However, I can't find the dge.csv, cell_type_dict.csv, a…
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Hi,
I was wondering if there is a possibility to add filtering steps for the Spatial Transcriptomics dataset. I want to filter my data however, I have some errors and probably that's due to that th…
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The wiki mention that panphlan can be used to quantify the "In-vivo transcriptional activity of individual strains of a species" when paired metagenomes and metatranscriptomes are available.
Howeve…
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## Batch 1: Searching the Zoonotic Reservoir for SARS-CoV-2
See this [preprint](https://www.biorxiv.org/content/10.1101/2020.04.22.046565v1).
### Steps
- [x] Create a list of all species that a…
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Hi,
A very useful feature in ORFik is collapsing duplicated reads, adding scores according to count, and weighed coverage calculation with coveragePerTiling (or rather coverageByTranscriptW).
I foun…