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https://mp.weixin.qq.com/s/_a-DmxZqbslq8X3ddFUIhg
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## Naming functions
Functions that are exported (e.g. user-facing) are named by the action completed by the function, the sourmash output type the act on, and if relevant, a description of the acti…
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Hello,
I have been receiving the following error message while running metacoder:
"Error in grid.Call.graphics(C_setviewport, vp, TRUE) :
non-finite location and/or size for viewport"
The puz…
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Example: https://github.com/fbreitwieser/pavian/blob/cd2f2173f6ad86c49e3af6dcc2407e96874de674/R/sample-build_sankey_network.R#L58
Alternative to a metacoder plot
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+ [x] signatures (output by `sourmash sketch` or `sourmash compute`):
* `read_signature()`, show how to read multiple signatures using purrr,
* upset plots: `from_signatures_to_upset_df()…
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* `summary_level` to `agglomeration_level` or `taxglom_level`: summary level isn't clear. it should be made more clear this is for agglomeration.
* switch `taxonomy_annotate_tibble` to `taxonomy_anno…
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+ metacoder visualization
+ `read_sourmash_taxonomy_annotate(file, intersect_bp_threshold)`
+ `pivot_sourmash_taxonomy_annotate_wider()`
+ `sourmash_taxonomy_annotate_to_metacoder(sour…
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## Location:
* Information Technology Park of Ho Chi Minh National University - Vo Truong Toan Street, Linh Trung, Thu Duc
## Salary Expectation:
* From $1000 - $4000 (depended on candidate's …
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when we use `sourmash tax annotate` on gather results, we produce a column with semicolon-separated lineages in it. we don't have many (any?) sourmash subcommands that natively ingest that format, alt…
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https://taylorreiter.github.io/2022-07-28-From-raw-metagenome-reads-to-phyloseq-taxonomy-table-using-sourmash-gather-and-sourmash-taxonomy/
https://github.com/sourmash-bio/sourmash/issues/2289
+…