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This problem has been posted few days ago, but I am also facing the same issue when running
Generic-ont preset on the Nanopore data. I was wondering if there is a reason to this error and how can it…
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This is a UMI distribution I see for one of my samples. I was wondering what parameters are suggested to modify to relax level of UMI filtering conducted here (possibly lower the UMI filtering thresho…
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Starting to think about this in the context of generating a lot of 10x VDJ data... it seems we will want to (eventually) have a way for `Clone`s to contain `cell`s (see https://github.com/airr-communi…
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Hello ncborcherding,
I worked with` scRepertoire` on version `2.0.3`. It works well on `positionalEntropy`, but not on ` positionalProperty`.
Thank you in advance for great help!
Best,
Yue…
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### Discussed in https://github.com/milaboratory/mixcr/discussions/1681
Originally posted by **Euchiz** May 31, 2024
Hi everyone,
I am currently working with single-cell Oxford Nanopore RNA…
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Hello,
I am running generic-amplicon preset for my TCR data with UMI length of 12. I am getting high percentage of aritifical diversity eliminated and was wondering why this might be.
I am…
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Hello,
Is there a way to map the MiXCR clones to their specific reads from the input fastq.gz file? Thanks!
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Hello,
I am currently aware that I can get list of V-gene/V-transcript sequences from MiXCR Gene Library. I was wondering if there is a way to access the reference points for each of the V gene fe…
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## Bug
Hi, I keep getting an error trying to load any MiXCR output to Immunarch. Immunarch requires the clones.txt files from MiXCR, but MiXCR outputs clones.tsv files now, which differ in content …
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Hi there,
I got a bulk rna-seq data of T cells with 10X Single Cell Mouse TCR Amplification Kit. Although it's a weird way to build the library, I still would like to do the analysis. Since the l…