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Running the example files through quandenser works fine, but I've ran into a problem when trying to run on a new dataset.
Specifically, when aligning runs, some messages to stdout return as: `Align…
asalt updated
5 years ago
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We have over 20,000 mzML data files and their corresponding quant files. When we tried to use Diann to merge them into a protein matrix, we encountered the error message "/var/spool/slurmd/job532496/s…
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Hi everyone,
I get this message while running QuantPipe:
OpenSwathWorkflow.exe -ini C:\TPP\data\CETests\Tr_HCD30.pytest_cache\v\cache\run.ini -use_ms1_traces -tr_irt C:\TPP\data\CETests\Tr_HCD3…
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### Basic information
* My operating system: macOS
* My MZmine version: 3.0.54-beta
* Input file: [peak/P4_Data/5C3_RC3_01_5370.mzXML from MSV000079398](https://massive.ucsd.edu/ProteoSAFe/datase…
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@oruebel Yesterday we uploaded a file that was acquired on a MALDI LTQ/XL (Thermo) and had been converted to mzML using msconvert with default parameters. BASTet correctly identified the unique m/z v…
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Hi there, this is an exciting tool; thanks for making it!
Here are a couple of minor requests on input handling:
1) It could be nice to check for file existence prior to generating the fragment i…
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Hi,
I'm trying to run DIA-NN on PXD026600 wide window data set with only FASTA input and set the Precursor FDR (%) to 100 as I don't want any filtering. The rest of the parameters are default.
…
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Hi,
I am using DIA-NN 1.8.1 in Windows 11 Pro with 13th Gen Intel(R) Core(TM) i7-13700 (processors 16, threads 24) for DIA analysis of 51 Thermo raw data files. First attempts were successful explo…
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mzXML has been superseded by mzML; however, some groups still use mzXML. Asari should either accept mzXML as input natively or simply convert mzXML to mzML internally.
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Hi expert,
The major issue is that the values of collision energy are all 0 in the DDA data obtained from negative mode when reading .mzml file by function "readMSData". They are available in the .…