shuzhao-li-lab asari issues

shuzhao-li-lab / asari

asari, metabolomics data preprocessing

Other

37 stars 9 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

How can we get MSII merged from all samples mgf file output (like xcms) and can also related to precursor in asari ?

#93 YUANMENG-1 opened 3 weeks ago
3
Fix terminology in asari output on khipu - use khipu for ion groups only excluding singletons

#92 shuzhao-li opened 1 month ago
0
documentation comments of `workflow.process_project()`

#91 NchuYJ opened 1 month ago
2
Packaging for conda installation besides Pypi

#89 shuzhao-li closed 3 months ago
1
Mass track detection on triple TOF

#88 jmmitc06 opened 5 months ago
1
To enforce RT in `12C/13C isotopic pairs as landmarks`

#87 shuzhao-li closed 5 months ago
1
To include `_baseline_, noise_level` in mass track records

#86 shuzhao-li opened 5 months ago
0
ValueError: max() arg is an empty sequence

#85 YuanyeChi closed 5 months ago
6
MAX_RETENTION_SHIFT in CompositeMap.calibrate_sample_RT is not used

#84 shuzhao-li opened 5 months ago
0
OverflowError: cannot convert float infinity to integer

#82 YuanyeChi closed 5 months ago
1
Is online version of Asari working right now?

#81 typewritermonkey closed 6 months ago
2
Mass Calibration Enhancement

#80 jmmitc06 opened 7 months ago
1
Asari viz issue

#79 feranmi-arcaea closed 6 months ago
4
Could the scripts for the calculation of mselectivity, SNR, and cselectivity for [xcms, mzmine] 's format's output file be shared?

#78 YUANMENG-1 closed 6 months ago
3
To update docker images

#77 shuzhao-li opened 9 months ago
1
Need to modify 'number_of_samples' in project.json if enable --drop_unaligned_samples

#76 YuanyeChi closed 10 months ago
2
-o '.' results in hidden output directory on MacOS/Linux

#75 jmmitc06 closed 10 months ago
1
Default Params from Other Instruments

#74 jmmitc06 opened 10 months ago
0
Pickle Alternative

#73 jmmitc06 opened 10 months ago
0
Autoheight (other params) must be global for experiments that will be joined

#72 jmmitc06 closed 10 months ago
1
Parallelize Mass Grid Construction

#71 jmmitc06 opened 11 months ago
0
Parallelize RT Alignment

#70 jmmitc06 opened 11 months ago
1
Minimize external depencies

#69 jmmitc06 opened 11 months ago
0
Better Testing

#68 jmmitc06 opened 11 months ago
0
Mass Tracks Should be Sparse

#67 jmmitc06 opened 11 months ago
1
Meta Experiment Trackability

#66 jmmitc06 opened 11 months ago
0
Caching of Pickles

#65 jmmitc06 closed 11 months ago
1
Unified Methods for Experiments and MetaExperiments

#64 jmmitc06 closed 11 months ago
1
Auto-optimize params for asari

#63 jmmitc06 opened 11 months ago
0
Autoheight for retention time alignment anchors

#62 jmmitc06 closed 11 months ago
1
non-relative mz error

#61 jmmitc06 opened 11 months ago
0
Add Readme to Results

#60 jmmitc06 closed 11 months ago
1
mzXML support and other file formats

#59 jmmitc06 opened 12 months ago
1
How to pick reference sample for alignment ?

#58 amnahsiddiqa closed 11 months ago
5
Implement Join Function/Workflow

#57 jmmitc06 closed 11 months ago
4
Autodetect ionization mode from mzML

#56 jmmitc06 closed 11 months ago
1
Output m/z and rt values of ions used for alignment

#55 jmmitc06 closed 12 months ago
1
interpolated ref RT producing infinity

#54 shuzhao-li closed 12 months ago
3
Support chained experiments linked by common samples

#53 jmmitc06 closed 11 months ago
3
Asari viz is broken

#52 jmmitc06 closed 1 year ago
1
Import statements are too broad

#51 jmmitc06 closed 1 year ago
1
Asari has no functions / modules when interfacing thru reticulate

#50 jmmitc06 closed 12 months ago
4
Retention Time Alignment Poorly Regularized Under Some Conditions

#49 jmmitc06 closed 1 year ago
4
Asari Viz, toggle to show all features vs. preferred features

#48 jmmitc06 opened 1 year ago
0
Asari Viz Should Report Parameters Used for Analysis

#47 jmmitc06 opened 1 year ago
1
Remove Prominence Window from Parameters.yaml

#46 jmmitc06 closed 1 year ago
0
Missing peaks

#45 xulei99 closed 11 months ago
17
Alignment warning

#44 xulei99 closed 1 year ago
2
Data with memory issue

#43 xulei99 closed 1 year ago
4
Sample Blacklist for RT Reference

#42 jmmitc06 closed 1 year ago
1