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shuzhao-li-lab
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asari
asari, metabolomics data preprocessing
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Retention Time Alignment Poorly Regularized Under Some Conditions
#49
jmmitc06
closed
1 year ago
4
Asari Viz, toggle to show all features vs. preferred features
#48
jmmitc06
opened
1 year ago
0
Asari Viz Should Report Parameters Used for Analysis
#47
jmmitc06
opened
1 year ago
1
Remove Prominence Window from Parameters.yaml
#46
jmmitc06
closed
1 year ago
0
Missing peaks
#45
xulei99
closed
1 year ago
17
Alignment warning
#44
xulei99
closed
1 year ago
2
Data with memory issue
#43
xulei99
closed
1 year ago
4
Sample Blacklist for RT Reference
#42
jmmitc06
closed
1 year ago
1
Improve build_chromatogram_by_mz_clustering in m/z dense regions
#41
jmmitc06
closed
1 week ago
1
Can asari distinguish the number of charges?
#40
xieyying
closed
1 year ago
7
Processing Nano-LC Data Very Slow
#39
jmmitc06
closed
1 year ago
4
small change on developers guide
#38
YuanyeChi
closed
1 year ago
0
Merge after integrated with readthedocs
#37
YuanyeChi
closed
1 year ago
0
Reference sample selection could be made more robust
#36
jmmitc06
closed
1 year ago
4
To update annotation to be more consistent with metDataModel
#35
shuzhao-li
opened
1 year ago
0
facing error using asari dashboard
#34
amnahsiddiqa
closed
1 year ago
1
Target extract seems to return only the first match in full feature table?
#33
gmhhope
closed
1 year ago
5
Error with `np.str` present in kiupu pkg due to version upgrade of numpy (> 1.24)
#32
gmhhope
closed
1 year ago
0
suppress khipu warnings
#31
shuzhao-li
closed
1 year ago
1
Remove __hacked_lowess__ in future version
#30
shuzhao-li
closed
1 year ago
1
To improve SNR calculation to a curve fitting
#29
shuzhao-li
closed
1 year ago
1
Asari skip all later samples with mzML processing error
#28
gmhhope
closed
1 year ago
2
Error when using docker-converted singularity container
#27
gmhhope
closed
1 year ago
1
Include export of peak list in concise format - to use for 2ndary annotation
#26
shuzhao-li
closed
1 year ago
1
Throttle of viz loading
#25
shuzhao-li
opened
1 year ago
0
default to removing pickle folder after processing
#24
shuzhao-li
closed
1 year ago
0
Include version number in project.json
#23
shuzhao-li
closed
1 year ago
0
Alternative way to run Asari using docker-compose
#22
gmhhope
closed
2 years ago
0
Docker limitation of resource handicap running Asari in docker
#21
gmhhope
closed
2 years ago
0
Errorred running docker pull shuzhao/asari
#20
amnahsiddiqa
closed
2 years ago
6
scipy find_peaks misses some peaks with high baseline noise
#19
shuzhao-li
closed
1 year ago
1
Some features/peaks are not in annotation output due to bug in JMS
#18
shuzhao-li
closed
2 years ago
1
help flag asari ; not found via home brewed python3 interpreter installation
#17
amnahsiddiqa
closed
2 years ago
1
narrower RT window for empCpd construction
#16
shuzhao-li
opened
2 years ago
0
Bug in mass track centroid assembly
#15
shuzhao-li
closed
2 years ago
1
Add QC subcommand and reporting
#14
shuzhao-li
opened
2 years ago
3
Add versions into project.json
#13
shuzhao-li
closed
2 years ago
0
Add targeted extraction
#12
shuzhao-li
closed
2 years ago
1
option to designate reference sample
#11
shuzhao-li
closed
2 years ago
1
memory issues while using -- autoheight TRUE;
#10
amnahsiddiqa
closed
1 year ago
0
Prefered Feature table have features with all samples having 0s and no column regarding samples with peaks detected
#9
amnahsiddiqa
closed
2 years ago
1
sample tracking error
#8
shuzhao-li
closed
2 years ago
1
To add a list of workflows
#7
shuzhao-li
closed
2 days ago
1
To add options to use txt/json for input parameters and workflows
#6
shuzhao-li
closed
2 years ago
2
To add OpenMS based workflows
#5
shuzhao-li
closed
1 year ago
1
Error when running asari on Version 0.6
#4
gmhhope
closed
2 years ago
1
Scipy Error Due to Unordered Lists
#3
obrien951
closed
2 years ago
3
we could use pymzMl for reading mzML files
#2
amnahsiddiqa
closed
2 years ago
1
small fixes needed
#1
amnahsiddiqa
closed
2 years ago
1
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