issues
search
shuzhao-li-lab
/
asari
asari, metabolomics data preprocessing
Other
38
stars
9
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Better Mass Track Extraction
#102
jmmitc06
opened
3 days ago
0
MassGrid constructing problems
#101
yufongpeng
opened
1 week ago
1
Asari Broken Pipe During Alignment
#100
jmmitc06
opened
1 week ago
1
Restart from Pickle
#99
jmmitc06
opened
1 week ago
0
Lipidomics Workflow
#98
jmmitc06
opened
1 week ago
0
Cluster RT Alignment
#97
jmmitc06
opened
2 weeks ago
2
Pickle size
#96
jmmitc06
closed
3 weeks ago
3
Peak boundaries issue
#95
yufongpeng
opened
1 month ago
3
Retention Index
#94
jmmitc06
opened
1 month ago
0
How can we get MSII merged from all samples mgf file output (like xcms) and can also related to precursor in asari ?
#93
YUANMENG-1
opened
2 months ago
3
Fix terminology in asari output on khipu - use khipu for ion groups only excluding singletons
#92
shuzhao-li
opened
3 months ago
0
documentation comments of `workflow.process_project()`
#91
NchuYJ
closed
1 month ago
2
Packaging for conda installation besides Pypi
#89
shuzhao-li
closed
5 months ago
1
Mass track detection on triple TOF
#88
jmmitc06
opened
7 months ago
1
To enforce RT in `12C/13C isotopic pairs as landmarks`
#87
shuzhao-li
closed
7 months ago
1
To include `_baseline_, noise_level` in mass track records
#86
shuzhao-li
closed
1 week ago
1
ValueError: max() arg is an empty sequence
#85
YuanyeChi
closed
7 months ago
6
MAX_RETENTION_SHIFT in CompositeMap.calibrate_sample_RT is not used
#84
shuzhao-li
opened
7 months ago
0
OverflowError: cannot convert float infinity to integer
#82
YuanyeChi
closed
7 months ago
1
Is online version of Asari working right now?
#81
typewritermonkey
closed
8 months ago
2
Mass Calibration Enhancement
#80
jmmitc06
opened
9 months ago
1
Asari viz issue
#79
feranmi-arcaea
closed
8 months ago
4
Could the scripts for the calculation of mselectivity, SNR, and cselectivity for [xcms, mzmine] 's format's output file be shared?
#78
YUANMENG-1
closed
8 months ago
3
To update docker images
#77
shuzhao-li
opened
11 months ago
1
Need to modify 'number_of_samples' in project.json if enable --drop_unaligned_samples
#76
YuanyeChi
closed
12 months ago
2
-o '.' results in hidden output directory on MacOS/Linux
#75
jmmitc06
closed
1 year ago
1
Default Params from Other Instruments
#74
jmmitc06
opened
1 year ago
0
Pickle Alternative
#73
jmmitc06
closed
3 weeks ago
1
Autoheight (other params) must be global for experiments that will be joined
#72
jmmitc06
closed
1 year ago
1
Parallelize Mass Grid Construction
#71
jmmitc06
closed
3 weeks ago
1
Parallelize RT Alignment
#70
jmmitc06
closed
2 weeks ago
3
Minimize external depencies
#69
jmmitc06
opened
1 year ago
0
Better Testing
#68
jmmitc06
opened
1 year ago
0
Mass Tracks Should be Sparse
#67
jmmitc06
closed
1 month ago
2
Meta Experiment Trackability
#66
jmmitc06
opened
1 year ago
0
Caching of Pickles
#65
jmmitc06
closed
1 year ago
1
Unified Methods for Experiments and MetaExperiments
#64
jmmitc06
closed
1 year ago
1
Auto-optimize params for asari
#63
jmmitc06
opened
1 year ago
0
Autoheight for retention time alignment anchors
#62
jmmitc06
closed
1 year ago
1
non-relative mz error
#61
jmmitc06
opened
1 year ago
0
Add Readme to Results
#60
jmmitc06
closed
1 year ago
1
mzXML support and other file formats
#59
jmmitc06
opened
1 year ago
1
How to pick reference sample for alignment ?
#58
amnahsiddiqa
closed
1 year ago
5
Implement Join Function/Workflow
#57
jmmitc06
closed
1 year ago
4
Autodetect ionization mode from mzML
#56
jmmitc06
closed
1 year ago
1
Output m/z and rt values of ions used for alignment
#55
jmmitc06
closed
1 year ago
1
interpolated ref RT producing infinity
#54
shuzhao-li
closed
1 year ago
3
Support chained experiments linked by common samples
#53
jmmitc06
closed
1 year ago
3
Asari viz is broken
#52
jmmitc06
closed
1 year ago
1
Import statements are too broad
#51
jmmitc06
closed
1 year ago
1
Next