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When I try to run the example data in first step:
`prepare-rpbp-genome c-elegans-test.yaml --overwrite`
I met this error:
subprocess.CalledProcessError: Command 'split-bed12-blocks /home/sun/…
PSSUN updated
6 years ago
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I got following error at almost the final step, ConsensusDriverTask:
`08-01 08:33:56 cat INFO Generating consensus gene set for Nestor_notabilis.
08-01 08:33:57 luigi-interface ERROR [pid 25712…
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The documentation has this command at the start of Part 3:
```
# format 16S copy number data
format_tree_and_trait_table.py -t ./genome_prediction/study_tree.tree -i gg_16S_counts.tab -o ./genome_p…
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The following links are broken.
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## [Publicly Accessible Galaxy Servers](https://galaxyproject.org/public-galaxy-servers/)
### [VirAmp](https://galaxyproject.org/public-galaxy-serve…
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Hi
I did `snakemake -j 40 --rerun-incomplete --latency-wait 10000` but I got the following Error:
```
Done. See output file: assembly.fasta.rnammer.gff
Waiting at most 10000 seconds for missi…
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Hi! This may be a prokka error but I can't get the conatiner to run on ubuntu 16.04. I'm getting the following error ```[05:00:26] Looking for 'blastp' - found /usr/local/bin/blastp
blastp: error whi…
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Here is what NCBI complained about:
I looked over your .tbl file and used it to annotate 200 of the sequences in your submission (the first 100, and then 301-400th). I had to split the fasta file l…
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We need to determine the best way to identify a reference species based on the assembled sequences (`contigs.fa`). Current ideas have touched upon MASH, but also Jspecies, etc. Still no solution.
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Hi Brandon,
I found something unexpected when plotted out metagene profiles using included IPy-notebook file "create-orf-type-metagene-profiles.ipynb" by using my own data from yeast.
Most of …
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While running the process-all-samples pipeline, STAR alignment completes successfully and creates the symlink as expected. However, the immediate steps thereafter can not recognize the bam file pointi…