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Hi , I am having an issue running this barcode, it does not have alot of reads, so it could be that no contigs will be assembled, but I just wanted to double check with you. I am doing metagenomic vir…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to Bioconductor
Repository: https://github.com/KJeynesCupper/mobileRNA
Confirm the following by editin…
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I use the latest `canu` release under Red Hat Enterprise Linux release 8.6 with slurm 22.05.7. I used this script:
`/home/fk8jybr/program/canu-2.2/bin/canu -p 0.070 -d /project/denolen/output/canu-…
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**System: MacOS 13.6.3**
**Canu version: canu 2.2**
**Input command：**
```
canu -d ecoli-gen3 -p ecoli-gen3 genomeSize=5m -pacbio E_coli_K12_PACBIO/ecoli_p6_25x.filtered.fastq
```
The fastq …
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Hi,
I'm using umi_tools dedup to remove PCR duplicates from an alignment to the transcriptome with STAR. After the deduplication, when I run RSEM, it seems that there are some reads from the pairs …
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Dear Mitchell,
After running the fiberseq-smk pipeline, I use ft center on my BAM to generate a metaprofile of m6A methylation rates around CTCF sites. However, I have noticed that there are many …
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Hi @GMOD team,
The fields of epigenetics and now epitranscriptomics have evolved very fast in recent years and there are now a few DNA and RNA modifications which can be detected at single molecule…
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I would like to use `canu v2.1.1` for assemble the 4 Gbp plant diploid genome. In the past I used `canu` with success. But now I get some error in assemble phase. I used `canu` under CentOS HPC enviro…
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## Current Definition
http://rs.tdwg.org/dwc/terms/MaterialSample
> A physical result of a sampling (or subsampling) event. In biological collections, the material sample is typically collected,…
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There are some improvements bug fixes we can make to the single cell visualization.