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Curated by @jingluodatacurator
https://canto.phi-base.org/curs/4709bfac76d4d9e6
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I'm using sniffles (more specifically I did use the old version v1.0.12b), and when running it we excluded non-primary alignment reads from the BAM files (using `samtools view -F 256`).
I do wonder…
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"The Plant Biotic Interactions (PBI) program supports research on the processes that mediate beneficial and antagonistic interactions between plants and their viral, bacterial, oomycete, fungal, plant…
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I understand the argument for `adjoint`, but `transpose` is really something different. I think it's somewhat silly that e.g. `Matrix{String}` cannot be `transpose`'d. if a type wants to opt-in to rec…
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Hi,
We are interested in the expression of transposable elements (TE).
An intact TE contains LTR regions and CDS region that encode transposases, which behave like polycistronic mRNA.
I was wo…
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I have a fes query on the scope of using SoloTE for expression analysis of human ERVs in single cell data, keeping in mind that there are very few tools to use for this objective in the single cell sp…
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I'm using the last version of the software 2.5.2 to assembly some HiFi reads of different plant species (with coverage over 60x).
I notice that if the content of transposable elements (or generally r…
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Hello!
I created TE.gtf file for use with TEtranscripts.
I get error "Error in building TE index "
Please, check my TE.gtf
What is wrong in my annotations?
Thanks!!
[sltk_bed_mod.gtf.zip](ht…
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Refers to a specific type II transposable element (see https://en.wikipedia.org/wiki/Miniature_Inverted-repeat_Transposable_Elements); replace by GO:0006313 'DNA transposition'
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Hi,
We are currently working on identifying gRNA sequences targeting sub-families of transposable elements. The purpose is to test "consensus" sequences that we identified to show that these sequen…