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Hi,
I am currently working on integrating HiC data and running HiFiasm, but I encountered an error "ERROR-r-break". I am not sure what this error means or under what circumstances it occurs. Attache…
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Is there documentation for the contents of the `results.csv` file generated by spacegraphcats queries?
I've included two lines of an output file below.
```
query,containment,similarity,bp,contig…
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When compiling REINDEER with g++ version 9.3.0 the index construction specified in the README fails with a *double free* error.
Command: `./Reindeer --index -f test/fof_unitigs.txt -o quick_out`
…
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Hi,
I tried to assemble the orthologs by using the aTRAM, which the orhologs were identified by orthofinder2 and included 3380 orthologs (in amino acid) as a multifasta file. The aTRAM command I us…
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Hi,
I used MaSuRCA 4.0.8 on my Ubuntu 20.04 LTS system to assemble an insect genome (approximately 460Mb).
illumina short reads (x100) and Nanopore long reads (x100) were submitted to the pipeline…
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Runnig bcalm with this command: `bcalm -in INFILES -out OUTFILE -kmer-size 31 -abundance-min 1`
Produces this error:
```
UF MPHF constructed (4803 MB) 01:52:39 memory [curre…
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Results are here: ```s3://serratus-rayan/rVert-assembly/```
### Folder structure:
Data:
```
pro/ -- Original .pro data
fasta/ -- Converted to .…
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Hi,
I'm trying to do a binning with metabat2 using the following config.yaml:
# ------ Samples ------
samples: '*' # specify a list samples to use or '*' to use all samples
# ------ Resources …
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Is there a way to kmer query a spacegraphcat to label all the kmers by their partition? I am trying to use spacegraphcat for kmer partitioning.
@ctb suggested `kmer,cdbg_id,level1_domset_id` as an …
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Hello,
I am working on plant species which is highly heterozygous and shows chromosomal aneuploidy. We have both 25× HiFi data and 50× HiC. Is it possible to generate a complete phased assembly u…