chrisquince STRONG issues

chrisquince / STRONG

Strain Resolution ON Graphs

MIT License

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issues

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Python BayesPaths if match := regexp.search(input_). SyntaxError: invalid syntax

#134 ElenaCabelloYeves opened 12 months ago
0
Problem with mamba install modules

#133 jyee123 closed 1 year ago
15
Do you have the pipeline listed for analysis/

#132 StickHu opened 1 year ago
0
Broken URLs in README

#131 bph6212ln closed 1 year ago
1
Restarting SPAdes in STRONG with --continue option

#130 cbreusing opened 2 years ago
5
Custom SCG list?

#129 iwilkie opened 2 years ago
0
pipeline crashing

#128 malihaaziz closed 2 years ago
0
Default parameters

#127 gabrieleghiotto opened 2 years ago
0
Restarting pipeline isssue

#126 cdiazmun opened 2 years ago
0
STRONG Hanging indefinitely on coverage rule

#125 rhysnewell closed 2 years ago
2
Compare STRONG and DESMAN results

#124 cifuj opened 2 years ago
3
Suggestion for install script

#123 nmb85 closed 2 years ago
2
Stuck at bayespaths step

#122 yuxiangtan opened 2 years ago
9
Question about the test result and problem in downloading the synthetic data

#121 yuxiangtan opened 2 years ago
0
Problems installing STRONG - No module named 'SnakeNest'

#120 cifuj closed 2 years ago
0
Co-assembly

#119 andrewjmc closed 3 years ago
4
fix issue with creation of small index instead of large index

#118 Sebastien-Raguideau closed 3 years ago
0
metabat2 binning

#117 ebustos128 opened 3 years ago
3
Question about comparing haplotypes generated between two different STRONG runs

#116 ShriramHPatel closed 3 years ago
2
sample fix and others

#115 Sebastien-Raguideau closed 3 years ago
0
Dependencies check unsuccesful

#114 cdiazmun opened 3 years ago
6
problem on SPAdes installation

#113 yuxiangtan opened 3 years ago
27
problem to get vbgmm module in python for concoct_refine

#112 yuxiangtan closed 3 years ago
3
Query on output generated in results section

#111 ShriramHPatel closed 3 years ago
5
Metabat2

#110 chrisquince closed 3 years ago
0
cds-subgraphs

#109 marcomeola opened 3 years ago
0
Bayesgraph taking too long

#108 marcomeola closed 3 years ago
8
bedtools coverage with -sorted flag

#107 marcomeola opened 3 years ago
1
compile the SPAdes and COG tools executables： fail

#106 weiting-liang closed 3 years ago
3
spades finished abnormally, OS return value: -9 on metagenomics data

#105 marcomeola opened 3 years ago
2
Installation problem: RuntimeError: Could not read JSON repodata file

#104 weiting-liang closed 3 years ago
1
Information request regarding assembler

#103 stefcamp closed 3 years ago
1
snakemake 5.29.0 : keyerror

#102 Sebastien-Raguideau opened 4 years ago
4
SPADES compilation issues

#101 Sebastien-Raguideau opened 4 years ago
0
Incorrect coverages in results gfa files

#100 chrisquince closed 4 years ago
1
Config file issue?

#99 chrisquince opened 4 years ago
0
Maybe we need to add libiconv to yaml

#98 chrisquince closed 4 years ago
2
Cant resolve new yaml

#97 chrisquince closed 4 years ago
1
Results todo#89

#96 chrisquince closed 4 years ago
0
STRONG reruns previous steps unesccearily

#95 chrisquince opened 4 years ago
0
BayesPaths output intensities for all input samples

#94 chrisquince opened 4 years ago
0
pdfunite new dependancy

#93 chrisquince closed 4 years ago
2
subgraph extraction yield whole 40k contigs for all cogs on it.

#92 Sebastien-Raguideau closed 4 years ago
1
Rule split_fasta fails if not enough input data to split

#91 KimSummers closed 4 years ago
1
Bp revise

#90 chrisquince closed 4 years ago
0
TODO LIST

#89 Sebastien-Raguideau opened 4 years ago
1
Desman reverse

#88 chrisquince closed 4 years ago
0
Desman first

#87 chrisquince closed 4 years ago
0
Assertion `!libs.empty()' failed in rule unitig_profiles

#86 KimSummers closed 4 years ago
1
Concoct_refine python version issues

#85 KimSummers opened 4 years ago
1