chrisquince STRONG issues

chrisquince / STRONG

Strain Resolution ON Graphs

MIT License

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

mAlloc in rule simplify

#84 KimSummers closed 4 years ago
1
Cluster config

#83 KimSummers closed 4 years ago
0
Initial installation problem

#82 KimSummers opened 4 years ago
0
Add calculation of bin per sample coverages

#81 chrisquince closed 4 years ago
5
Command line length limit

#80 chrisquince closed 4 years ago
1
Prodigal by bin2

#79 chrisquince closed 4 years ago
0
Latest version breaks snakemake reruns

#78 chrisquince opened 4 years ago
0
Cog tools update

#77 chrisquince closed 4 years ago
0
Take into account incomplete bins, to detect which cogs should be ignored.

#76 Sebastien-Raguideau closed 4 years ago
21
Filter COGs against all bins not just MAGs

#75 chrisquince closed 4 years ago
2
Graph simplification sometimes results in very complex COGs

#74 chrisquince closed 4 years ago
2
Error in flag_bad_cogs on FMTMeren

#73 chrisquince closed 5 years ago
4
Desman missing from conda dependencies

#72 chrisquince opened 5 years ago
5
Require Bowtie 2 version 2.3.4.3 at least

#71 chrisquince opened 5 years ago
0
Refactoring #64

#70 Sebastien-Raguideau closed 5 years ago
0
refactoring from issue #64

#69 Sebastien-Raguideau closed 5 years ago
0
Debug

#68 chrisquince closed 5 years ago
1
Assertion error is ugly way to end dryrun

#67 chrisquince closed 4 years ago
2
Error on Test data set with refactoring2

#66 chrisquince opened 5 years ago
2
merge_bin.py fail on creating symlink

#65 Sebastien-Raguideau closed 5 years ago
5
Remaining refactoring

#64 snurk closed 5 years ago
4
Remove temp files from the output root

#63 snurk closed 4 years ago
1
Get rid of the checkpoint in running concoct

#62 snurk opened 5 years ago
0
Benchmarking2

#61 Sebastien-Raguideau closed 5 years ago
0
Evaluation of DESMAN output

#60 chrisquince closed 5 years ago
1
Second round of refactorings

#59 snurk closed 5 years ago
0
Benchmarking

#58 Sebastien-Raguideau closed 5 years ago
0
bayesgraph fail on SyntheticCommunity32/Seb_Debug2 merged bin

#57 Sebastien-Raguideau opened 5 years ago
5
pipeline.done should be heavylifting.done

#56 chrisquince closed 5 years ago
1
Python2.7 incomptatability in refactored scripts

#55 chrisquince closed 5 years ago
4
Some steps seem to restart even if previously finished successfully

#54 snurk opened 5 years ago
1
Use file listing the selected bins

#53 snurk closed 5 years ago
2
Make all links symbolic

#52 snurk closed 5 years ago
2
Desman frequencies generated incorrectly

#51 chrisquince closed 5 years ago
0
Refactoring I

#50 snurk closed 5 years ago
0
Add a guide for creating environment with meta.yaml to wiki

#49 snurk closed 5 years ago
4
Refactorising and restructuring workflow

#48 chrisquince closed 5 years ago
5
Are we using python2 or python3 in scripts?

#47 chrisquince closed 5 years ago
2
Incompatibility in COG databases

#46 chrisquince closed 5 years ago
3
Missing contigs

#45 chrisquince closed 5 years ago
1
Point pipeline at BayesPaths.py in submodule

#44 chrisquince closed 5 years ago
1
Pipeline always fails first time

#43 chrisquince closed 5 years ago
7
Snakemake launcher of benchmarking scripts

#42 snurk opened 5 years ago
3
Check Bin220 VAF histograms for all AD7 samples

#41 snurk closed 5 years ago
8
Packaging and release of SPAdes tools

#40 snurk opened 5 years ago
2
Review DESMAN results on the AD7 Bin_220

#39 snurk opened 5 years ago
0
Test clean installation

#38 snurk opened 5 years ago
0
Update the repo with strain resolution code

#37 snurk closed 5 years ago
2
Check that pipeline does not fail

#36 snurk opened 5 years ago
0
Create toy example

#35 snurk closed 5 years ago
2

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