issues
search
chrisquince
/
STRONG
Strain Resolution ON Graphs
MIT License
44
stars
9
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
mAlloc in rule simplify
#84
KimSummers
closed
4 years ago
1
Cluster config
#83
KimSummers
closed
4 years ago
0
Initial installation problem
#82
KimSummers
opened
4 years ago
0
Add calculation of bin per sample coverages
#81
chrisquince
closed
4 years ago
5
Command line length limit
#80
chrisquince
closed
4 years ago
1
Prodigal by bin2
#79
chrisquince
closed
4 years ago
0
Latest version breaks snakemake reruns
#78
chrisquince
opened
4 years ago
0
Cog tools update
#77
chrisquince
closed
4 years ago
0
Take into account incomplete bins, to detect which cogs should be ignored.
#76
Sebastien-Raguideau
closed
4 years ago
21
Filter COGs against all bins not just MAGs
#75
chrisquince
closed
4 years ago
2
Graph simplification sometimes results in very complex COGs
#74
chrisquince
closed
4 years ago
2
Error in flag_bad_cogs on FMTMeren
#73
chrisquince
closed
4 years ago
4
Desman missing from conda dependencies
#72
chrisquince
opened
4 years ago
5
Require Bowtie 2 version 2.3.4.3 at least
#71
chrisquince
opened
4 years ago
0
Refactoring #64
#70
Sebastien-Raguideau
closed
4 years ago
0
refactoring from issue #64
#69
Sebastien-Raguideau
closed
4 years ago
0
Debug
#68
chrisquince
closed
4 years ago
1
Assertion error is ugly way to end dryrun
#67
chrisquince
closed
4 years ago
2
Error on Test data set with refactoring2
#66
chrisquince
opened
4 years ago
2
merge_bin.py fail on creating symlink
#65
Sebastien-Raguideau
closed
4 years ago
5
Remaining refactoring
#64
snurk
closed
4 years ago
4
Remove temp files from the output root
#63
snurk
closed
4 years ago
1
Get rid of the checkpoint in running concoct
#62
snurk
opened
4 years ago
0
Benchmarking2
#61
Sebastien-Raguideau
closed
4 years ago
0
Evaluation of DESMAN output
#60
chrisquince
closed
4 years ago
1
Second round of refactorings
#59
snurk
closed
4 years ago
0
Benchmarking
#58
Sebastien-Raguideau
closed
4 years ago
0
bayesgraph fail on SyntheticCommunity32/Seb_Debug2 merged bin
#57
Sebastien-Raguideau
opened
4 years ago
5
pipeline.done should be heavylifting.done
#56
chrisquince
closed
4 years ago
1
Python2.7 incomptatability in refactored scripts
#55
chrisquince
closed
4 years ago
4
Some steps seem to restart even if previously finished successfully
#54
snurk
opened
5 years ago
1
Use file listing the selected bins
#53
snurk
closed
4 years ago
2
Make all links symbolic
#52
snurk
closed
4 years ago
2
Desman frequencies generated incorrectly
#51
chrisquince
closed
4 years ago
0
Refactoring I
#50
snurk
closed
4 years ago
0
Add a guide for creating environment with meta.yaml to wiki
#49
snurk
closed
4 years ago
4
Refactorising and restructuring workflow
#48
chrisquince
closed
4 years ago
5
Are we using python2 or python3 in scripts?
#47
chrisquince
closed
5 years ago
2
Incompatibility in COG databases
#46
chrisquince
closed
5 years ago
3
Missing contigs
#45
chrisquince
closed
5 years ago
1
Point pipeline at BayesPaths.py in submodule
#44
chrisquince
closed
5 years ago
1
Pipeline always fails first time
#43
chrisquince
closed
5 years ago
7
Snakemake launcher of benchmarking scripts
#42
snurk
opened
5 years ago
3
Check Bin220 VAF histograms for all AD7 samples
#41
snurk
closed
5 years ago
8
Packaging and release of SPAdes tools
#40
snurk
opened
5 years ago
2
Review DESMAN results on the AD7 Bin_220
#39
snurk
opened
5 years ago
0
Test clean installation
#38
snurk
opened
5 years ago
0
Update the repo with strain resolution code
#37
snurk
closed
5 years ago
2
Check that pipeline does not fail
#36
snurk
opened
5 years ago
0
Create toy example
#35
snurk
closed
5 years ago
2
Previous
Next